Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005204A_C01 KMC005204A_c01
(500 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197347.1| putative protein; protein id: At5g18460.1, supp... 139 2e-32
ref|NP_175933.1| unknown protein; protein id: At1g55360.1 [Arabi... 129 2e-29
gb|AAO00777.1| unknown protein [Arabidopsis thaliana] 129 2e-29
gb|AAM65243.1| putative carboxyl-terminal peptidase [Arabidopsis... 128 3e-29
ref|NP_566457.1| expressed protein; protein id: At3g13510.1, sup... 128 3e-29
>ref|NP_197347.1| putative protein; protein id: At5g18460.1, supported by cDNA:
119256. [Arabidopsis thaliana]
gi|21537066|gb|AAM61407.1| unknown [Arabidopsis
thaliana]
Length = 430
Score = 139 bits (349), Expect = 2e-32
Identities = 58/88 (65%), Positives = 74/88 (83%)
Frame = -1
Query: 500 WGGEVVNTRANDEHTSTQMGSGHFAEDGYGKASYFRNIEIVDVTNTLRSVQNITTIAETS 321
WGGEVVNTRA+ HT+TQMGSGHF ++G+GKASYFRN+E+VD N+L V ++ +AE +
Sbjct: 342 WGGEVVNTRASGRHTTTQMGSGHFPDEGFGKASYFRNLEVVDSDNSLVPVHDVKILAENT 401
Query: 320 NCYNIQTSYSKEWGTYFYYGGPGKNPQC 237
CY+I++SYS EWGTYFYYGGPG NP+C
Sbjct: 402 ECYDIKSSYSNEWGTYFYYGGPGFNPRC 429
>ref|NP_175933.1| unknown protein; protein id: At1g55360.1 [Arabidopsis thaliana]
gi|25345698|pir||H96595 unknown protein, 9920-11896
[imported] - Arabidopsis thaliana
gi|12323166|gb|AAG51562.1|AC027034_8 unknown protein;
9920-11896 [Arabidopsis thaliana]
gi|24417260|gb|AAN60240.1| unknown [Arabidopsis
thaliana]
Length = 422
Score = 129 bits (324), Expect = 2e-29
Identities = 53/89 (59%), Positives = 72/89 (80%)
Frame = -1
Query: 500 WGGEVVNTRANDEHTSTQMGSGHFAEDGYGKASYFRNIEIVDVTNTLRSVQNITTIAETS 321
WGGEVVN++++ +HTSTQMGSG F E+G+ KASYFRNI++VD +N L++ + + T E S
Sbjct: 334 WGGEVVNSQSDGQHTSTQMGSGKFPEEGFSKASYFRNIQVVDGSNNLKAPKGLGTFTEQS 393
Query: 320 NCYNIQTSYSKEWGTYFYYGGPGKNPQCP 234
NCY++QT + +WG YFYYGGPGKN +CP
Sbjct: 394 NCYDVQTGSNDDWGHYFYYGGPGKNQKCP 422
>gb|AAO00777.1| unknown protein [Arabidopsis thaliana]
Length = 422
Score = 129 bits (324), Expect = 2e-29
Identities = 53/89 (59%), Positives = 72/89 (80%)
Frame = -1
Query: 500 WGGEVVNTRANDEHTSTQMGSGHFAEDGYGKASYFRNIEIVDVTNTLRSVQNITTIAETS 321
WGGEVVN++++ +HTSTQMGSG F E+G+ KASYFRNI++VD +N L++ + + T E S
Sbjct: 334 WGGEVVNSQSDGQHTSTQMGSGKFPEEGFSKASYFRNIQVVDGSNNLKAPKGLGTFTEQS 393
Query: 320 NCYNIQTSYSKEWGTYFYYGGPGKNPQCP 234
NCY++QT + +WG YFYYGGPGKN +CP
Sbjct: 394 NCYDVQTGSNDDWGHYFYYGGPGKNQKCP 422
>gb|AAM65243.1| putative carboxyl-terminal peptidase [Arabidopsis thaliana]
Length = 419
Score = 128 bits (322), Expect = 3e-29
Identities = 53/89 (59%), Positives = 69/89 (76%)
Frame = -1
Query: 500 WGGEVVNTRANDEHTSTQMGSGHFAEDGYGKASYFRNIEIVDVTNTLRSVQNITTIAETS 321
WGGEVVN+++ HT TQMGSGHF E+G+ KASYFRNI++VD +N L++ + + T E S
Sbjct: 331 WGGEVVNSQSEGHHTWTQMGSGHFPEEGFSKASYFRNIQVVDGSNNLKAPKGLGTFTEKS 390
Query: 320 NCYNIQTSYSKEWGTYFYYGGPGKNPQCP 234
NCY++QT + +WG YFYYGGPGKN CP
Sbjct: 391 NCYDVQTGSNDDWGHYFYYGGPGKNKNCP 419
>ref|NP_566457.1| expressed protein; protein id: At3g13510.1, supported by cDNA:
37810., supported by cDNA: gi_18700164 [Arabidopsis
thaliana] gi|9280303|dbj|BAB01758.1|
gb|AAC16072.1~gene_id:MRP15.17~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|18700165|gb|AAL77694.1| AT3g13510/MRP15_15
[Arabidopsis thaliana] gi|24797030|gb|AAN64527.1|
At3g13510/MRP15_15 [Arabidopsis thaliana]
Length = 419
Score = 128 bits (322), Expect = 3e-29
Identities = 53/89 (59%), Positives = 69/89 (76%)
Frame = -1
Query: 500 WGGEVVNTRANDEHTSTQMGSGHFAEDGYGKASYFRNIEIVDVTNTLRSVQNITTIAETS 321
WGGEVVN+++ HT TQMGSGHF E+G+ KASYFRNI++VD +N L++ + + T E S
Sbjct: 331 WGGEVVNSQSEGHHTWTQMGSGHFPEEGFSKASYFRNIQVVDGSNNLKAPKGLGTFTEKS 390
Query: 320 NCYNIQTSYSKEWGTYFYYGGPGKNPQCP 234
NCY++QT + +WG YFYYGGPGKN CP
Sbjct: 391 NCYDVQTGSNDDWGHYFYYGGPGKNKNCP 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 442,382,089
Number of Sequences: 1393205
Number of extensions: 9087560
Number of successful extensions: 25157
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 24157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25098
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
