Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005203A_C01 KMC005203A_c01
(737 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P16002|PLAS_PEA Plastocyanin, chloroplast precursor gi|81939|... 266 2e-70
sp|P00299|PLAS_POPNI Plastocyanin A, chloroplast precursor gi|74... 254 9e-67
sp|P17340|PLAS_LYCES Plastocyanin, chloroplast precursor gi|1002... 249 3e-65
sp|P00289|PLAS_SPIOL Plastocyanin, chloroplast precursor gi|2144... 245 4e-64
sp|P11970|PLAT_POPNI Plastocyanin B, chloroplast precursor gi|21... 244 1e-63
>sp|P16002|PLAS_PEA Plastocyanin, chloroplast precursor gi|81939|pir||S04861
plastocyanin precursor - garden pea
gi|20846|emb|CAA34212.1| precursor peptide (AA -69 to
99) [Pisum sativum] gi|226940|prf||1611464A plastocyanin
Length = 168
Score = 266 bits (681), Expect = 2e-70
Identities = 135/168 (80%), Positives = 150/168 (88%), Gaps = 1/168 (0%)
Frame = -2
Query: 694 MATVTSTAVAIPSFTGLKS-AGSKVSASAKVSSSPSQMPRLSVKASLKDFGVAVVATAAS 518
MATVTST VAIPSF+GLK+ A +KVSA AK+ +S SQ PRL V+ASLKDFGVA+VATAAS
Sbjct: 1 MATVTSTTVAIPSFSGLKTNAATKVSAMAKIPTSTSQSPRLCVRASLKDFGVALVATAAS 60
Query: 517 AVLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGGVD 338
AVLASNA+A+E+LLG+ DGGLAFVP+S V+ GE I FKNNAGFPHNVVFDEDE+P GVD
Sbjct: 61 AVLASNALAVEVLLGASDGGLAFVPSSLEVSAGETIVFKNNAGFPHNVVFDEDEIPAGVD 120
Query: 337 ASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 194
ASKISM +EDLLNAPGETYSV LDAKGTYKFYCSPHQGAGMVG VTVN
Sbjct: 121 ASKISMPEEDLLNAPGETYSVKLDAKGTYKFYCSPHQGAGMVGQVTVN 168
>sp|P00299|PLAS_POPNI Plastocyanin A, chloroplast precursor gi|7427618|pir||CUPX
plastocyanin a precursor [validated] - Lombardy poplar
gi|929813|emb|CAA90564.1| plastocyanin a [Populus nigra]
Length = 168
Score = 254 bits (649), Expect = 9e-67
Identities = 128/170 (75%), Positives = 148/170 (86%), Gaps = 3/170 (1%)
Frame = -2
Query: 694 MATVTSTAVAIPSFTGLKS---AGSKVSASAKVSSSPSQMPRLSVKASLKDFGVAVVATA 524
MATVTS AV+IPSFTGLK+ + +KVSASAKVS+SP +PRLS+KAS+KD G AVVATA
Sbjct: 1 MATVTSAAVSIPSFTGLKAGSASNAKVSASAKVSASP--LPRLSIKASMKDVGAAVVATA 58
Query: 523 ASAVLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGG 344
ASA++ASNAMAI++LLG+DDG LAFVP+ FS++PGEKI FKNNAGFPHN+VFDED +P G
Sbjct: 59 ASAMIASNAMAIDVLLGADDGSLAFVPSEFSISPGEKIVFKNNAGFPHNIVFDEDSIPSG 118
Query: 343 VDASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 194
VDASKISMS+EDLLNA GET+ V L KG Y FYCSPHQGAGMVG VTVN
Sbjct: 119 VDASKISMSEEDLLNAKGETFEVALSNKGEYSFYCSPHQGAGMVGKVTVN 168
>sp|P17340|PLAS_LYCES Plastocyanin, chloroplast precursor gi|100238|pir||S05303
plastocyanin precursor - tomato gi|19300|emb|CAA32121.1|
pre-plastocyanin (AA -64 to 106) [Lycopersicon
esculentum]
Length = 170
Score = 249 bits (636), Expect = 3e-65
Identities = 131/172 (76%), Positives = 147/172 (85%), Gaps = 5/172 (2%)
Frame = -2
Query: 694 MATVTSTAVAIPSFTGLK---SAGSKVS--ASAKVSSSPSQMPRLSVKASLKDFGVAVVA 530
MATVTS AVAIPSFTGLK S+ S+VS ASAKV+++P + RL+VKASLKD G V A
Sbjct: 1 MATVTSAAVAIPSFTGLKAGASSSSRVSTGASAKVAAAP--VARLTVKASLKDVGAVVAA 58
Query: 529 TAASAVLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVP 350
TA SA+LASNAMA+E+LLG DDG LAF+P +FSV+ GEKITFKNNAGFPHNVVFDEDE+P
Sbjct: 59 TAVSAMLASNAMALEVLLGGDDGSLAFIPGNFSVSAGEKITFKNNAGFPHNVVFDEDEIP 118
Query: 349 GGVDASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 194
GVDASKISMS+EDLLNA GETYSVTL KGTY FYC+PHQGAGMVG VTVN
Sbjct: 119 AGVDASKISMSEEDLLNAAGETYSVTLSEKGTYTFYCAPHQGAGMVGKVTVN 170
>sp|P00289|PLAS_SPIOL Plastocyanin, chloroplast precursor gi|2144305|pir||CUSP
plastocyanin precursor - spinach
gi|21267|emb|CAA28398.1| pre-plastocyanin (AA -69 to 99)
[Spinacia oleracea]
Length = 168
Score = 245 bits (626), Expect = 4e-64
Identities = 123/168 (73%), Positives = 142/168 (84%), Gaps = 1/168 (0%)
Frame = -2
Query: 694 MATVTSTA-VAIPSFTGLKSAGSKVSASAKVSSSPSQMPRLSVKASLKDFGVAVVATAAS 518
MATV S+A VA+PSFTGLK++GS +AK+ + + +PRLSVKASLK+ G AVVATAA+
Sbjct: 1 MATVASSAAVAVPSFTGLKASGSIKPTTAKIIPTTTAVPRLSVKASLKNVGAAVVATAAA 60
Query: 517 AVLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGGVD 338
+LA NAMA+E+LLG DG LAF+P FSVA GE+I FKNNAGFPHNVVFDEDE+P GVD
Sbjct: 61 GLLAGNAMAVEVLLGGGDGSLAFLPGDFSVASGEEIVFKNNAGFPHNVVFDEDEIPSGVD 120
Query: 337 ASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 194
A+KISMS+EDLLNAPGETY VTL KGTYKFYCSPHQGAGMVG VTVN
Sbjct: 121 AAKISMSEEDLLNAPGETYKVTLTEKGTYKFYCSPHQGAGMVGKVTVN 168
>sp|P11970|PLAT_POPNI Plastocyanin B, chloroplast precursor gi|2117430|pir||S58208
plastocyanin b precursor - black poplar
gi|929815|emb|CAA90565.1| plastocyanin b precursor
[Populus nigra]
Length = 168
Score = 244 bits (622), Expect = 1e-63
Identities = 126/170 (74%), Positives = 143/170 (84%), Gaps = 3/170 (1%)
Frame = -2
Query: 694 MATVTSTAVAIPSFTGLKSAGS---KVSASAKVSSSPSQMPRLSVKASLKDFGVAVVATA 524
MA VTS AV+IPSFTGLK+A + KVSASAKVS+SP +PRLS+KASLK+ G AVVATA
Sbjct: 1 MAAVTSAAVSIPSFTGLKAASASNAKVSASAKVSASP--LPRLSIKASLKEVGAAVVATA 58
Query: 523 ASAVLASNAMAIEILLGSDDGGLAFVPNSFSVAPGEKITFKNNAGFPHNVVFDEDEVPGG 344
ASA++ASNAMA+++LLG+DDG LAFVP+ FSV GEKI FKNNAGFPHNV+FDED VP G
Sbjct: 59 ASAMIASNAMAVDVLLGADDGSLAFVPSEFSVPAGEKIVFKNNAGFPHNVLFDEDAVPSG 118
Query: 343 VDASKISMSDEDLLNAPGETYSVTLDAKGTYKFYCSPHQGAGMVGSVTVN 194
VD SKISMS+EDLLNA GET+ V L KG Y FYCSPHQGAGMVG V VN
Sbjct: 119 VDVSKISMSEEDLLNAKGETFEVALSDKGEYTFYCSPHQGAGMVGKVIVN 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 651,908,731
Number of Sequences: 1393205
Number of extensions: 14822141
Number of successful extensions: 61265
Number of sequences better than 10.0: 236
Number of HSP's better than 10.0 without gapping: 54538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60550
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
