Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005202A_C01 KMC005202A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194953.1| H+-transporting ATP synthase chain 9 - like pro... 162 4e-50
gb|AAK68813.1| H+-transporting ATP synthase-like protein [Arabid... 159 3e-49
gb|AAO72579.1| H+-transporting ATP synthase chain 9-like protein... 149 8e-45
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplast precurso... 166 2e-40
prf||1917214A CF0 ATP synthase:SUBUNIT=9 151 5e-36
>ref|NP_194953.1| H+-transporting ATP synthase chain 9 - like protein; protein id:
At4g32260.1, supported by cDNA: 20798., supported by
cDNA: gi_14596170, supported by cDNA: gi_16604405,
supported by cDNA: gi_18377521 [Arabidopsis thaliana]
gi|7484996|pir||T05402 H+-transporting two-sector ATPase
(EC 3.6.3.14) chain 9 - Arabidopsis thaliana
gi|2864617|emb|CAA16964.1| H+-transporting ATP synthase
chain9 - like protein [Arabidopsis thaliana]
gi|5730141|emb|CAB52473.1| ATP synthase beta chain
precursor (subunit II) [Arabidopsis thaliana]
gi|7270130|emb|CAB79944.1| H+-transporting ATP synthase
chain 9-like protein [Arabidopsis thaliana]
gi|16604406|gb|AAL24209.1| AT4g32260/F10M6_100
[Arabidopsis thaliana] gi|21554175|gb|AAM63254.1|
H+-transporting ATP synthase chain 9-like protein
[Arabidopsis thaliana]
Length = 219
Score = 162 bits (410), Expect(2) = 4e-50
Identities = 81/105 (77%), Positives = 96/105 (91%)
Frame = -1
Query: 574 FDFNLTLPIIVAEFLFLMVALDQIYFSPLGKFMDDRDAAIREKLNSVKDTSSEVKQLEEQ 395
FDFNLTLPIIV EFLFLM ALD++Y+SPLG FMD RDA+I+EKL SVKDTS+EVK+L+EQ
Sbjct: 82 FDFNLTLPIIVVEFLFLMFALDKVYYSPLGNFMDQRDASIKEKLASVKDTSTEVKELDEQ 141
Query: 394 ANAVLKAARAEISTALNKMKKETQVEVEQKIAEGRLKVDAELQEA 260
A AV++AARAEI+ ALNKMKKETQVEVE+K+AEGR KV+ EL+EA
Sbjct: 142 AAAVMRAARAEIAAALNKMKKETQVEVEEKLAEGRKKVEEELKEA 186
Score = 57.8 bits (138), Expect(2) = 4e-50
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -2
Query: 267 RRPLANLEKQKEETIKSLDSQIAALSQDIVKKVLPS 160
+ LA+LE QKEETIK+LDSQIAALS+DIVKKVLPS
Sbjct: 184 KEALASLESQKEETIKALDSQIAALSEDIVKKVLPS 219
>gb|AAK68813.1| H+-transporting ATP synthase-like protein [Arabidopsis thaliana]
gi|18377522|gb|AAL66927.1| H+-transporting ATP
synthase-like protein [Arabidopsis thaliana]
Length = 219
Score = 159 bits (402), Expect(2) = 3e-49
Identities = 80/105 (76%), Positives = 95/105 (90%)
Frame = -1
Query: 574 FDFNLTLPIIVAEFLFLMVALDQIYFSPLGKFMDDRDAAIREKLNSVKDTSSEVKQLEEQ 395
FDFNLTLPIIV EFLFLM ALD++Y+S LG FMD RDA+I+EKL SVKDTS+EVK+L+EQ
Sbjct: 82 FDFNLTLPIIVVEFLFLMFALDKVYYSQLGNFMDQRDASIKEKLASVKDTSTEVKELDEQ 141
Query: 394 ANAVLKAARAEISTALNKMKKETQVEVEQKIAEGRLKVDAELQEA 260
A AV++AARAEI+ ALNKMKKETQVEVE+K+AEGR KV+ EL+EA
Sbjct: 142 AAAVMRAARAEIAAALNKMKKETQVEVEEKLAEGRKKVEEELKEA 186
Score = 57.8 bits (138), Expect(2) = 3e-49
Identities = 29/36 (80%), Positives = 33/36 (91%)
Frame = -2
Query: 267 RRPLANLEKQKEETIKSLDSQIAALSQDIVKKVLPS 160
+ LA+LE QKEETIK+LDSQIAALS+DIVKKVLPS
Sbjct: 184 KEALASLESQKEETIKALDSQIAALSEDIVKKVLPS 219
>gb|AAO72579.1| H+-transporting ATP synthase chain 9-like protein [Oryza sativa
(japonica cultivar-group)]
Length = 211
Score = 149 bits (375), Expect(2) = 8e-45
Identities = 76/105 (72%), Positives = 88/105 (83%)
Frame = -1
Query: 574 FDFNLTLPIIVAEFLFLMVALDQIYFSPLGKFMDDRDAAIREKLNSVKDTSSEVKQLEEQ 395
FDFNLTLP+I EFL LMVALD++YF+PLGKFMD+RDA IR +L VKD S EV+QLEEQ
Sbjct: 73 FDFNLTLPLIATEFLLLMVALDKLYFTPLGKFMDERDAKIRAELGGVKDASEEVRQLEEQ 132
Query: 394 ANAVLKAARAEISTALNKMKKETQVEVEQKIAEGRLKVDAELQEA 260
A AVLKAARAEI+ ALNKMKKET E+E K+ EGR +V+AEL EA
Sbjct: 133 AAAVLKAARAEIAAALNKMKKETTQELEAKLDEGRRRVEAELVEA 177
Score = 53.5 bits (127), Expect(2) = 8e-45
Identities = 26/34 (76%), Positives = 31/34 (90%)
Frame = -2
Query: 258 LANLEKQKEETIKSLDSQIAALSQDIVKKVLPSA 157
LANLE QKEE +K+LD+QIA+LS +IVKKVLPSA
Sbjct: 178 LANLEAQKEEAVKALDAQIASLSDEIVKKVLPSA 211
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplast precursor (Subunit II)
gi|479533|pir||S34473 H+-transporting two-sector ATPase
(EC 3.6.3.14) chain 9 - spinach
gi|394755|emb|CAA50520.1| CF(o)II ATP synthase subunit 9
[Spinacia oleracea]
Length = 222
Score = 166 bits (420), Expect = 2e-40
Identities = 83/105 (79%), Positives = 97/105 (92%)
Frame = -1
Query: 574 FDFNLTLPIIVAEFLFLMVALDQIYFSPLGKFMDDRDAAIREKLNSVKDTSSEVKQLEEQ 395
FDFNLTLPII+AEFLFLM ALD+IY++PLG FMD RDA+I+E+L+ VKDTSSEVKQLEEQ
Sbjct: 84 FDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQ 143
Query: 394 ANAVLKAARAEISTALNKMKKETQVEVEQKIAEGRLKVDAELQEA 260
ANAV++AARAEIS ALNKMKKETQ+EVE K+AEGR K++ ELQEA
Sbjct: 144 ANAVMRAARAEISAALNKMKKETQLEVEAKLAEGRKKIEVELQEA 188
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/48 (58%), Positives = 36/48 (74%)
Frame = -2
Query: 306 RLRRGD*RWMLSCRRPLANLEKQKEETIKSLDSQIAALSQDIVKKVLP 163
+L G + + + L +LE+QKE+TIKSLDSQI+ALS DIVKKVLP
Sbjct: 173 KLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLP 220
>prf||1917214A CF0 ATP synthase:SUBUNIT=9
Length = 222
Score = 151 bits (382), Expect = 5e-36
Identities = 77/105 (73%), Positives = 91/105 (86%)
Frame = -1
Query: 574 FDFNLTLPIIVAEFLFLMVALDQIYFSPLGKFMDDRDAAIREKLNSVKDTSSEVKQLEEQ 395
FDFNLTLPII+AEFLFLM ALD+IY++PLG FMD RDA+I+E+L+ VKDTSSEVKQLEEQ
Sbjct: 84 FDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQLEEQ 143
Query: 394 ANAVLKAARAEISTALNKMKKETQVEVEQKIAEGRLKVDAELQEA 260
ANAV++AARAEIS ALN K + EVE K+AEGR K++ ELQEA
Sbjct: 144 ANAVMRAARAEISAALNTQLKMKKEEVEAKLAEGRKKIEVELQEA 188
Score = 53.5 bits (127), Expect = 2e-06
Identities = 28/48 (58%), Positives = 36/48 (74%)
Frame = -2
Query: 306 RLRRGD*RWMLSCRRPLANLEKQKEETIKSLDSQIAALSQDIVKKVLP 163
+L G + + + L +LE+QKE+TIKSLDSQI+ALS DIVKKVLP
Sbjct: 173 KLAEGRKKIEVELQEALGSLEQQKEDTIKSLDSQISALSDDIVKKVLP 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,408,176
Number of Sequences: 1393205
Number of extensions: 12994989
Number of successful extensions: 305779
Number of sequences better than 10.0: 9383
Number of HSP's better than 10.0 without gapping: 97351
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201843
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
