Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005201A_C01 KMC005201A_c01
(622 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK19620.1|AF336287_1 WD1521 [Gossypium hirsutum] 171 9e-42
gb|AAM95643.1| WD-repeat protein GhTTG2 [Gossypium hirsutum] gi|... 171 9e-42
gb|AAM95646.1| WD-repeat protein GhTTG4 [Gossypium hirsutum] 170 1e-41
gb|AAC18912.1| ATAN11 [Arabidopsis thaliana] 169 3e-41
ref|NP_172751.1| flower pigmentation protein ATAN11; protein id:... 169 3e-41
>gb|AAK19620.1|AF336287_1 WD1521 [Gossypium hirsutum]
Length = 314
Score = 171 bits (432), Expect = 9e-42
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = -3
Query: 620 QRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 441
QRHQASVNA+AWAPHSSCHICTAGDDSQALIWDLSSM QPVEGGLDPILAYTAGAEIEQL
Sbjct: 232 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMSQPVEGGLDPILAYTAGAEIEQL 291
Query: 440 QWSSSQPDWVAIAFSTKLQILRV 372
QWSSSQPDWVAIAFSTKLQILRV
Sbjct: 292 QWSSSQPDWVAIAFSTKLQILRV 314
>gb|AAM95643.1| WD-repeat protein GhTTG2 [Gossypium hirsutum]
gi|22324805|gb|AAM95644.1| WD-repeat protein GhTTG2
[Gossypium hirsutum]
Length = 346
Score = 171 bits (432), Expect = 9e-42
Identities = 81/83 (97%), Positives = 82/83 (98%)
Frame = -3
Query: 620 QRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 441
QRHQASVNA+AWAPHSSCHICTAGDDSQALIWDLSSM QPVEGGLDPILAYTAGAEIEQL
Sbjct: 264 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSSMSQPVEGGLDPILAYTAGAEIEQL 323
Query: 440 QWSSSQPDWVAIAFSTKLQILRV 372
QWSSSQPDWVAIAFSTKLQILRV
Sbjct: 324 QWSSSQPDWVAIAFSTKLQILRV 346
>gb|AAM95646.1| WD-repeat protein GhTTG4 [Gossypium hirsutum]
Length = 346
Score = 170 bits (431), Expect = 1e-41
Identities = 81/83 (97%), Positives = 83/83 (99%)
Frame = -3
Query: 620 QRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 441
+RHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPV+GGLDPILAYTAGAEIEQL
Sbjct: 264 RRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVKGGLDPILAYTAGAEIEQL 323
Query: 440 QWSSSQPDWVAIAFSTKLQILRV 372
QWSSSQPDWVAIAFSTKLQILRV
Sbjct: 324 QWSSSQPDWVAIAFSTKLQILRV 346
>gb|AAC18912.1| ATAN11 [Arabidopsis thaliana]
Length = 346
Score = 169 bits (427), Expect = 3e-41
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -3
Query: 620 QRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 441
QRHQASVNA+AWAPHSSCHICTAGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAEIEQL
Sbjct: 264 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQL 323
Query: 440 QWSSSQPDWVAIAFSTKLQILRV 372
QWSSSQPDWVAIAFSTKLQILRV
Sbjct: 324 QWSSSQPDWVAIAFSTKLQILRV 346
>ref|NP_172751.1| flower pigmentation protein ATAN11; protein id: At1g12910.1,
supported by cDNA: 37574., supported by cDNA:
gi_20260403, supported by cDNA: gi_2290527 [Arabidopsis
thaliana] gi|25518671|pir||G86262 hypothetical protein
F13K23.16 - Arabidopsis thaliana
gi|8698737|gb|AAF78495.1|AC012187_15 Identical to WD
repeat protein ATAN11 from Arabidopsis thaliana
gb|U94746 and contains multiple WD domain PF|00400
repeats. ESTs gb|H35958, gb|AA712360, gb|R90717,
gb|AW004301 come from this gene
gi|20260404|gb|AAM13100.1| WD repeat protein ATAN11
[Arabidopsis thaliana] gi|22136196|gb|AAM91176.1| WD
repeat protein ATAN11 [Arabidopsis thaliana]
Length = 346
Score = 169 bits (427), Expect = 3e-41
Identities = 80/83 (96%), Positives = 82/83 (98%)
Frame = -3
Query: 620 QRHQASVNAVAWAPHSSCHICTAGDDSQALIWDLSSMGQPVEGGLDPILAYTAGAEIEQL 441
QRHQASVNA+AWAPHSSCHICTAGDDSQALIWD+SSMGQ VEGGLDPILAYTAGAEIEQL
Sbjct: 264 QRHQASVNAIAWAPHSSCHICTAGDDSQALIWDISSMGQHVEGGLDPILAYTAGAEIEQL 323
Query: 440 QWSSSQPDWVAIAFSTKLQILRV 372
QWSSSQPDWVAIAFSTKLQILRV
Sbjct: 324 QWSSSQPDWVAIAFSTKLQILRV 346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,326,811
Number of Sequences: 1393205
Number of extensions: 11061117
Number of successful extensions: 39671
Number of sequences better than 10.0: 226
Number of HSP's better than 10.0 without gapping: 36909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39538
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
