Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005199A_C04 KMC005199A_c04
(760 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplast precu... 226 3e-61
ref|NP_567265.1| coded for by A. thaliana cDNA AA041141; protein... 228 6e-59
sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplast precu... 215 3e-58
emb|CAA68727.1| ATP synthase [Spinacia oleracea] 215 3e-58
emb|CAB52365.1| ATP synthase gamma chain, chloroplast precursor ... 226 4e-58
>sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplast precursor gi|67880|pir||PWNTG
H+-transporting two-sector ATPase (EC 3.6.3.14) gamma
chain precursor, chloroplast - common tobacco
gi|19785|emb|CAA45152.1| ATP synthase (gamma subunit)
[Nicotiana tabacum]
Length = 377
Score = 226 bits (577), Expect(2) = 3e-61
Identities = 116/128 (90%), Positives = 123/128 (95%)
Frame = -1
Query: 697 KGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDAL 518
KGEICDINGNCVDAA DE FRLTTKEGKLTVERD IRTKT DFSPILQFEQDPVQILDAL
Sbjct: 249 KGEICDINGNCVDAANDEFFRLTTKEGKLTVERDIIRTKTTDFSPILQFEQDPVQILDAL 308
Query: 517 LPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILE 338
LPLYLNSQ+LRALQESLASELAARMSAMS+A+DNA++LKK+LS VYNRQRQAKITGEILE
Sbjct: 309 LPLYLNSQILRALQESLASELAARMSAMSSATDNATELKKNLSRVYNRQRQAKITGEILE 368
Query: 337 IVAGANAL 314
IVAGA+AL
Sbjct: 369 IVAGADAL 376
Score = 31.6 bits (70), Expect(2) = 3e-61
Identities = 14/15 (93%), Positives = 15/15 (99%)
Frame = -2
Query: 744 LVKSDPVIHTLLPLS 700
LVKS+PVIHTLLPLS
Sbjct: 233 LVKSEPVIHTLLPLS 247
>ref|NP_567265.1| coded for by A. thaliana cDNA AA041141; protein id: At4g04640.1,
supported by cDNA: 6687., supported by cDNA:
gi_16226523, supported by cDNA: gi_17473928, supported
by cDNA: gi_20148352 [Arabidopsis thaliana]
gi|461550|sp|Q01908|ATP1_ARATH ATP synthase gamma chain
1, chloroplast precursor gi|81635|pir||B39732
H+-transporting two-sector ATPase (EC 3.6.3.14) gamma-1
chain precursor, chloroplast - Arabidopsis thaliana
gi|166632|gb|AAA32753.1| ATP synthase gamma-subunit
gi|5732056|gb|AAD48955.1|AF149414_4 Arabidopsis thaliana
APC1-ATP synthase gamma chain 1 (GB:M61741); contains
similarity to Pfam PF00231 -ATP synthase; score=658.6,
E=3.1e-194n n+1 gi|7267222|emb|CAB80829.1| Arabidopsis
thaliana APC1-ATP synthase gamma chain 1 (GB:M61741),
contains similarity to Pfam PF00231 -ATP synthase,
score=658.6, E=3.1e-194n n+1, coded for by A. thaliana
cDNA T22421, coded for by A. thaliana cDNA W43301, coded
for by A. thaliana cDNA AA041141~Contains ATP synthase
gamma subunit signature AA358-371~contains EST
gb:AA041141, AW004569.1, AW004261.1, W43301, T22421
gi|16226524|gb|AAL16191.1|AF428422_1 AT4g04640/T19J18_4
[Arabidopsis thaliana] gi|17473929|gb|AAL38375.1|
unknown protein [Arabidopsis thaliana]
gi|20148353|gb|AAM10067.1| unknown protein [Arabidopsis
thaliana] gi|21594056|gb|AAM65974.1| ATP synthase
gamma-subunit, putative [Arabidopsis thaliana]
Length = 373
Score = 228 bits (582), Expect = 6e-59
Identities = 118/127 (92%), Positives = 122/127 (95%)
Frame = -1
Query: 697 KGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDAL 518
KGEICDING CVDAAEDE FRLTTKEGKLTVER+T RT TADFSPILQFEQDPVQILDAL
Sbjct: 245 KGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETFRTPTADFSPILQFEQDPVQILDAL 304
Query: 517 LPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILE 338
LPLYLNSQ+LRALQESLASELAARMSAMS+ASDNASDLKKSLS VYNR+RQAKITGEILE
Sbjct: 305 LPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILE 364
Query: 337 IVAGANA 317
IVAGANA
Sbjct: 365 IVAGANA 371
Score = 32.3 bits (72), Expect = 7.6
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = -2
Query: 744 LVKSDPVIHTLLPLSRREKSVTSMGT 667
LVKS+PVIHTLLPLS + + GT
Sbjct: 229 LVKSEPVIHTLLPLSPKGEICDINGT 254
>sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplast precursor gi|67879|pir||PWSPG
H+-transporting two-sector ATPase (EC 3.6.3.14) gamma
chain precursor, chloroplast - spinach
gi|21238|emb|CAA35158.1| gamma-subunit of chloroplast
ATP synthase [Spinacia oleracea]
gi|531111|emb|CAA53734.1| gamma subunit of the
chloroplast ATP synthase [Spinacia oleracea]
Length = 364
Score = 215 bits (547), Expect(2) = 3e-58
Identities = 110/127 (86%), Positives = 119/127 (93%)
Frame = -1
Query: 697 KGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDAL 518
KGEICDING CVDAAEDELFRLTTKEGKLTVERD I+T+T FSPIL+FEQDP QILDAL
Sbjct: 236 KGEICDINGKCVDAAEDELFRLTTKEGKLTVERDMIKTETPAFSPILEFEQDPAQILDAL 295
Query: 517 LPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILE 338
LPLYLNSQ+LRALQESLASELAARM+AMSNA+DNA++LKK+LS YNR RQAKITGEILE
Sbjct: 296 LPLYLNSQILRALQESLASELAARMTAMSNATDNANELKKTLSINYNRARQAKITGEILE 355
Query: 337 IVAGANA 317
IVAGANA
Sbjct: 356 IVAGANA 362
Score = 33.1 bits (74), Expect(2) = 3e-58
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2
Query: 744 LVKSDPVIHTLLPLS 700
LVKSDPVIHTLLPLS
Sbjct: 220 LVKSDPVIHTLLPLS 234
>emb|CAA68727.1| ATP synthase [Spinacia oleracea]
Length = 329
Score = 215 bits (547), Expect(2) = 3e-58
Identities = 110/127 (86%), Positives = 119/127 (93%)
Frame = -1
Query: 697 KGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDAL 518
KGEICDING CVDAAEDELFRLTTKEGKLTVERD I+T+T FSPIL+FEQDP QILDAL
Sbjct: 201 KGEICDINGKCVDAAEDELFRLTTKEGKLTVERDMIKTETPAFSPILEFEQDPAQILDAL 260
Query: 517 LPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILE 338
LPLYLNSQ+LRALQESLASELAARM+AMSNA+DNA++LKK+LS YNR RQAKITGEILE
Sbjct: 261 LPLYLNSQILRALQESLASELAARMTAMSNATDNANELKKTLSINYNRARQAKITGEILE 320
Query: 337 IVAGANA 317
IVAGANA
Sbjct: 321 IVAGANA 327
Score = 33.1 bits (74), Expect(2) = 3e-58
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = -2
Query: 744 LVKSDPVIHTLLPLS 700
LVKSDPVIHTLLPLS
Sbjct: 185 LVKSDPVIHTLLPLS 199
>emb|CAB52365.1| ATP synthase gamma chain, chloroplast precursor [Arabidopsis
thaliana]
Length = 302
Score = 226 bits (575), Expect = 4e-58
Identities = 117/127 (92%), Positives = 121/127 (95%)
Frame = -1
Query: 697 KGEICDINGNCVDAAEDELFRLTTKEGKLTVERDTIRTKTADFSPILQFEQDPVQILDAL 518
KGEICDING CVDAAEDE FRLTTKEGKLTVER+T RT TADFSPIL FEQDPVQILDAL
Sbjct: 174 KGEICDINGTCVDAAEDEFFRLTTKEGKLTVERETFRTPTADFSPILLFEQDPVQILDAL 233
Query: 517 LPLYLNSQVLRALQESLASELAARMSAMSNASDNASDLKKSLSTVYNRQRQAKITGEILE 338
LPLYLNSQ+LRALQESLASELAARMSAMS+ASDNASDLKKSLS VYNR+RQAKITGEILE
Sbjct: 234 LPLYLNSQILRALQESLASELAARMSAMSSASDNASDLKKSLSMVYNRKRQAKITGEILE 293
Query: 337 IVAGANA 317
IVAGANA
Sbjct: 294 IVAGANA 300
Score = 32.3 bits (72), Expect = 7.6
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = -2
Query: 744 LVKSDPVIHTLLPLSRREKSVTSMGT 667
LVKS+PVIHTLLPLS + + GT
Sbjct: 158 LVKSEPVIHTLLPLSPKGEICDINGT 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,871,835
Number of Sequences: 1393205
Number of extensions: 12783931
Number of successful extensions: 41757
Number of sequences better than 10.0: 278
Number of HSP's better than 10.0 without gapping: 38916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41493
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
