Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005197A_C01 KMC005197A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63803.1| nuclear transport factor 2, putative [Arabidopsis... 135 4e-31
ref|NP_174118.1| nuclear transport factor 2, putative; protein i... 135 4e-31
ref|NP_174051.1| putative nuclear transport factor; protein id: ... 123 2e-27
dbj|BAB90110.1| putative Nuclear transport factor 2 [Oryza sativ... 105 6e-22
sp|Q9XJ54|NTF2_ORYSA Nuclear transport factor 2 (NTF-2) gi|53602... 98 9e-20
>gb|AAM63803.1| nuclear transport factor 2, putative [Arabidopsis thaliana]
Length = 123
Score = 135 bits (340), Expect = 4e-31
Identities = 63/73 (86%), Positives = 68/73 (92%)
Frame = -1
Query: 591 KLTSLPFQQCLHSISTVDCQPSGVNNGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGS 412
KLTSLPFQQC H ISTVDCQPSG +GMLVFVSGNLQLAGE+HALKFSQMFHL+PTPQGS
Sbjct: 51 KLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGS 110
Query: 411 YYVLNDVFRLNYA 373
+YV ND+FRLNYA
Sbjct: 111 FYVFNDIFRLNYA 123
>ref|NP_174118.1| nuclear transport factor 2, putative; protein id: At1g27970.1,
supported by cDNA: 27366. [Arabidopsis thaliana]
gi|15214148|sp|Q9C7F5|NTF2_ARATH Nuclear transport
factor 2 (NTF-2) gi|25310683|pir||B86405 probable
nuclear transport factor 2 [imported] - Arabidopsis
thaliana gi|12323001|gb|AAG51491.1|AC069471_22 nuclear
transport factor 2, putative [Arabidopsis thaliana]
Length = 126
Score = 135 bits (340), Expect = 4e-31
Identities = 63/73 (86%), Positives = 68/73 (92%)
Frame = -1
Query: 591 KLTSLPFQQCLHSISTVDCQPSGVNNGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGS 412
KLTSLPFQQC H ISTVDCQPSG +GMLVFVSGNLQLAGE+HALKFSQMFHL+PTPQGS
Sbjct: 54 KLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGS 113
Query: 411 YYVLNDVFRLNYA 373
+YV ND+FRLNYA
Sbjct: 114 FYVFNDIFRLNYA 126
>ref|NP_174051.1| putative nuclear transport factor; protein id: At1g27310.1,
supported by cDNA: gi_14596202, supported by cDNA:
gi_18377443 [Arabidopsis thaliana]
gi|25310685|pir||H86398 protein F17L21.10 [imported] -
Arabidopsis thaliana
gi|9802547|gb|AAF99749.1|AC004557_28 F17L21.10
[Arabidopsis thaliana] gi|14596203|gb|AAK68829.1|
similar to nuclear transport factor 2 [Arabidopsis
thaliana] gi|18377444|gb|AAL66888.1| similar to nuclear
transport factor 2 [Arabidopsis thaliana]
Length = 122
Score = 123 bits (309), Expect = 2e-27
Identities = 60/73 (82%), Positives = 65/73 (88%)
Frame = -1
Query: 591 KLTSLPFQQCLHSISTVDCQPSGVNNGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGS 412
KLT LPFQQC H+I+TVDCQPSG GMLVFVSGNLQLAGEQHALKFSQMFHLI + QG+
Sbjct: 51 KLTGLPFQQCKHNITTVDCQPSGPAGGMLVFVSGNLQLAGEQHALKFSQMFHLI-SNQGN 109
Query: 411 YYVLNDVFRLNYA 373
YYV ND+FRLNYA
Sbjct: 110 YYVFNDIFRLNYA 122
>dbj|BAB90110.1| putative Nuclear transport factor 2 [Oryza sativa (japonica
cultivar-group)]
Length = 146
Score = 105 bits (261), Expect = 6e-22
Identities = 48/73 (65%), Positives = 59/73 (80%), Gaps = 1/73 (1%)
Frame = -1
Query: 591 KLTSLPFQQCLHSISTVDCQPS-GVNNGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQG 415
KL LPF+QC H++ TVDCQP+ G+LVFVSGNLQLAGE+H L+FSQMF L+P QG
Sbjct: 73 KLLGLPFEQCRHAVCTVDCQPTPSFPGGILVFVSGNLQLAGEEHQLRFSQMFQLVPNEQG 132
Query: 414 SYYVLNDVFRLNY 376
S++V ND+FRLNY
Sbjct: 133 SFFVQNDIFRLNY 145
>sp|Q9XJ54|NTF2_ORYSA Nuclear transport factor 2 (NTF-2) gi|5360221|dbj|BAA81910.1|
nuclear transport factor 2 (NTF2) [Oryza sativa
(japonica cultivar-group)]
Length = 122
Score = 97.8 bits (242), Expect = 9e-20
Identities = 47/72 (65%), Positives = 56/72 (77%)
Frame = -1
Query: 591 KLTSLPFQQCLHSISTVDCQPSGVNNGMLVFVSGNLQLAGEQHALKFSQMFHLIPTPQGS 412
KL SLPF QC H I+TVDCQPSG GMLVFVSG+L+ ++H LKFSQMF L+P G+
Sbjct: 51 KLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGN 109
Query: 411 YYVLNDVFRLNY 376
+YV ND+FRLNY
Sbjct: 110 FYVQNDMFRLNY 121
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 520,557,778
Number of Sequences: 1393205
Number of extensions: 11692330
Number of successful extensions: 91984
Number of sequences better than 10.0: 745
Number of HSP's better than 10.0 without gapping: 54459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82097
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
