Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005196A_C01 KMC005196A_c01
(780 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09390 21K protein precursor - alfalfa gi|1871577|emb|CAA72... 295 4e-79
sp|P17407|21KD_DAUCA 21 KD PROTEIN PRECURSOR (1.2 PROTEIN) gi|82... 209 5e-53
emb|CAB85625.1| putative ripening-related protein [Vitis vinifera] 204 9e-52
gb|AAM67138.1| ripening-related protein-like [Arabidopsis thaliana] 199 4e-50
ref|NP_201041.1| ripening-related protein - like; protein id: At... 197 1e-49
>pir||T09390 21K protein precursor - alfalfa gi|1871577|emb|CAA72315.1| putative
21kD protein precursor [Medicago sativa]
Length = 187
Score = 295 bits (756), Expect = 4e-79
Identities = 140/177 (79%), Positives = 162/177 (91%)
Frame = -3
Query: 742 LLSALYLTTANPTNFIKSSCSTTQYPTLCVESLSAYATTIQQDPHQLVQTALSLTLNRTQ 563
LL+ L + T+ PTNFIKSSCSTT YPTLCVESLS YATTIQQDPHQLVQTALSL+LN+TQ
Sbjct: 11 LLTLLSIATSTPTNFIKSSCSTTSYPTLCVESLSVYATTIQQDPHQLVQTALSLSLNKTQ 70
Query: 562 STKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSRSLKELKMCTIKGEDFTWHISN 383
STK+FV++CK+FRGLKP+EYAALHDC EEI+DSVDRL RSLK LK+C I+GEDF+WHISN
Sbjct: 71 STKSFVTKCKSFRGLKPREYAALHDCVEEITDSVDRLRRSLKGLKLCKIQGEDFSWHISN 130
Query: 382 VETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNIAQVTSNALSLVNKYAANH 212
VETWVSSALTDESTCSDGF G A++G++K SIR+RMVN+AQVTSNALSL+N+YA H
Sbjct: 131 VETWVSSALTDESTCSDGFGGKALDGRMKASIRSRMVNVAQVTSNALSLINQYATKH 187
>sp|P17407|21KD_DAUCA 21 KD PROTEIN PRECURSOR (1.2 PROTEIN) gi|82050|pir||S10911
hypothetical protein precursor - carrot
gi|18312|emb|CAA36642.1| precursor polypeptide (AA -22
to 171) [Daucus carota]
Length = 193
Score = 209 bits (531), Expect = 5e-53
Identities = 103/179 (57%), Positives = 135/179 (74%), Gaps = 2/179 (1%)
Frame = -3
Query: 742 LLSALYLTTANPTN-FIKSSCSTTQYPTLCVESLSAYATTIQQDPHQLVQTALSLTLNRT 566
LL L +A P N FIK+SC+ T YP +C +SLSAYA TIQ +P +L TAL ++L RT
Sbjct: 13 LLVILAAASAAPANQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRT 72
Query: 565 QSTKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSRSLKELK-MCTIKGEDFTWHI 389
Q + F+ R F+GLK ++YAA+HDC EE+ DS+DR+SRS E+K + KG DFT+ +
Sbjct: 73 QQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRM 132
Query: 388 SNVETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNIAQVTSNALSLVNKYAANH 212
SNVETWVS+ALTDE+TC DGFAG M+GKIK S+RA++V +A+VTSNAL+LVN +AA H
Sbjct: 133 SNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191
>emb|CAB85625.1| putative ripening-related protein [Vitis vinifera]
Length = 198
Score = 204 bits (520), Expect = 9e-52
Identities = 101/193 (52%), Positives = 143/193 (73%), Gaps = 10/193 (5%)
Frame = -3
Query: 760 LLTTLFLLSALYLTT---------ANPTNFIKSSCSTTQYPTLCVESLSAYATTIQQDPH 608
+L L ++S L T+ + T+FIK+ CS T+YP LCV+SLS YA+TIQ+ P
Sbjct: 6 VLVVLVVVSVLLYTSRVAESAAANSGSTSFIKAKCSATRYPALCVQSLSVYASTIQKSPK 65
Query: 607 QLVQTALSLTLNRTQSTKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSRSLKELK 428
QL TAL+++L + QS KAFVS+ +G+K +E A+ DC EE++DS+DRLSRS++EL+
Sbjct: 66 QLAHTALTVSLAKAQSAKAFVSKLGKIKGMKARELEAVQDCLEEMNDSIDRLSRSVQELE 125
Query: 427 MC-TIKGEDFTWHISNVETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNIAQVTS 251
KG+DF WH+SNV+TWVS+ALTD++TC DGFAG A++G++K SIR +V +AQVTS
Sbjct: 126 EAGKSKGQDFLWHMSNVDTWVSAALTDDNTCVDGFAGRALDGRVKASIRGWLVTVAQVTS 185
Query: 250 NALSLVNKYAANH 212
NAL+LVN++AA +
Sbjct: 186 NALALVNQFAAKN 198
>gb|AAM67138.1| ripening-related protein-like [Arabidopsis thaliana]
Length = 202
Score = 199 bits (506), Expect = 4e-50
Identities = 103/196 (52%), Positives = 140/196 (70%), Gaps = 12/196 (6%)
Frame = -3
Query: 763 LLLTTLFLLSALYLTTANPT----------NFIKSSCSTTQYPTLCVESLSAYATTIQQD 614
L+L+ +LLS L LT A NFI+SSC TT YP LCV SLS YA IQ
Sbjct: 8 LILSISYLLS-LELTAATAASQTGASKKAINFIQSSCKTTTYPALCVHSLSVYANDIQTS 66
Query: 613 PHQLVQTALSLTLNRTQSTKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSRSLKE 434
P +L +TA+++TL+R QSTK FVSR +GLK +E A+ DC EE++D+VDRL+RS++E
Sbjct: 67 PKRLAETAIAVTLSRAQSTKLFVSRLTRMKGLKKREVEAIKDCVEEMNDTVDRLTRSVQE 126
Query: 433 LKMC-TIKGED-FTWHISNVETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNIAQ 260
LK+C + K +D F +H+SN +TW S+ALTDE+TCSDGF+G M+G+IK S+RAR++N+
Sbjct: 127 LKLCGSAKDQDQFAYHMSNAQTWTSAALTDENTCSDGFSGRVMDGRIKNSVRARIMNVGH 186
Query: 259 VTSNALSLVNKYAANH 212
TSNALSL+N +A +
Sbjct: 187 ETSNALSLINAFAKTY 202
>ref|NP_201041.1| ripening-related protein - like; protein id: At5g62350.1, supported
by cDNA: 9669., supported by cDNA: gi_14423453,
supported by cDNA: gi_18377555 [Arabidopsis thaliana]
gi|8809648|dbj|BAA97199.1| ripening-related
protein-like; contains similarity to pectinesterase
[Arabidopsis thaliana]
gi|14423454|gb|AAK62409.1|AF386964_1 ripening-related
protein-like; contains similarity to pectinesterase
[Arabidopsis thaliana] gi|18377556|gb|AAL66944.1|
ripening-related protein-like [Arabidopsis thaliana]
Length = 202
Score = 197 bits (502), Expect = 1e-49
Identities = 102/196 (52%), Positives = 140/196 (71%), Gaps = 12/196 (6%)
Frame = -3
Query: 763 LLLTTLFLLSALYLTTANPT----------NFIKSSCSTTQYPTLCVESLSAYATTIQQD 614
+LL+ +LLS L LT A NFI+SSC TT YP LCV SLS YA IQ
Sbjct: 8 VLLSISYLLS-LELTAATAASQTGASKKAINFIQSSCKTTTYPALCVHSLSVYANDIQTS 66
Query: 613 PHQLVQTALSLTLNRTQSTKAFVSRCKNFRGLKPKEYAALHDCAEEISDSVDRLSRSLKE 434
P +L +TA+++TL+R QSTK FVSR +GLK +E A+ DC EE++D+VDRL++S++E
Sbjct: 67 PKRLAETAIAVTLSRAQSTKLFVSRLTRMKGLKKREVEAIKDCVEEMNDTVDRLTKSVQE 126
Query: 433 LKMC-TIKGED-FTWHISNVETWVSSALTDESTCSDGFAGNAMNGKIKTSIRARMVNIAQ 260
LK+C + K +D F +H+SN +TW S+ALTDE+TCSDGF+G M+G+IK S+RAR++N+
Sbjct: 127 LKLCGSAKDQDQFAYHMSNAQTWTSAALTDENTCSDGFSGRVMDGRIKNSVRARIMNVGH 186
Query: 259 VTSNALSLVNKYAANH 212
TSNALSL+N +A +
Sbjct: 187 ETSNALSLINAFAKTY 202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 704,494,915
Number of Sequences: 1393205
Number of extensions: 18382743
Number of successful extensions: 346908
Number of sequences better than 10.0: 9454
Number of HSP's better than 10.0 without gapping: 112172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228731
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
