Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005192A_C01 KMC005192A_c01
(571 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084833.1| ribosomal protein L14 [Lotus japonicus] gi|1335... 236 1e-61
gb|AAN04890.1| ribosomal protein L14 [Vigna angularis] 225 3e-58
ref|NP_783267.1| ribosomal protein L14 [Atropa belladonna] gi|20... 216 2e-55
ref|NP_051094.1| ribosomal protein L14 [Arabidopsis thaliana] gi... 215 4e-55
gb|AAL35833.1|AF441853_1 RBL1 [Cucumis sativus] 214 6e-55
>ref|NP_084833.1| ribosomal protein L14 [Lotus japonicus] gi|13359015|dbj|BAB33232.1|
ribosomal protein L14 [Lotus japonicus]
Length = 122
Score = 236 bits (602), Expect = 1e-61
Identities = 120/120 (100%), Positives = 120/120 (100%)
Frame = -3
Query: 569 QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI 390
QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI
Sbjct: 3 QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI 62
Query: 389 VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 210
VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL
Sbjct: 63 VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 122
>gb|AAN04890.1| ribosomal protein L14 [Vigna angularis]
Length = 122
Score = 225 bits (573), Expect = 3e-58
Identities = 112/120 (93%), Positives = 118/120 (98%)
Frame = -3
Query: 569 QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI 390
QPQTHLNVADNSGAR+LMCIRI+GASNRRYAYIGDIVVAVIK+AVPNT LERSEVIRAVI
Sbjct: 3 QPQTHLNVADNSGARELMCIRILGASNRRYAYIGDIVVAVIKQAVPNTNLERSEVIRAVI 62
Query: 389 VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 210
VRTCK+LKRSNGIIIQYDDNAAV+IDQEGNPKGTRIFCAIARELRQ NFTKIVSLAPE+L
Sbjct: 63 VRTCKQLKRSNGIIIQYDDNAAVIIDQEGNPKGTRIFCAIARELRQLNFTKIVSLAPEVL 122
>ref|NP_783267.1| ribosomal protein L14 [Atropa belladonna]
gi|20068367|emb|CAC88080.1| ribosomal protein L14
[Atropa belladonna]
Length = 122
Score = 216 bits (550), Expect = 2e-55
Identities = 106/120 (88%), Positives = 116/120 (96%)
Frame = -3
Query: 569 QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI 390
QPQTHLNVADNSGAR+LMCIRIIGASNRRYA+IGD++VAVIKEAVPN PLERSE++RAVI
Sbjct: 3 QPQTHLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAVPNMPLERSEIVRAVI 62
Query: 389 VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 210
VRTCKELKR NG+II+YDDNAAVVIDQEGNPKGTRIF AIARELR+ NFTKIVSLAPE+L
Sbjct: 63 VRTCKELKRDNGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRELNFTKIVSLAPEVL 122
>ref|NP_051094.1| ribosomal protein L14 [Arabidopsis thaliana]
gi|6685862|sp|P56792|RK14_ARATH Chloroplast 50S
ribosomal protein L14 gi|5881730|dbj|BAA84421.1|
ribosomal protein L14 [Arabidopsis thaliana]
Length = 122
Score = 215 bits (547), Expect = 4e-55
Identities = 106/120 (88%), Positives = 116/120 (96%)
Frame = -3
Query: 569 QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI 390
QPQT+LNVADNSGAR+LMCIRIIGASNRRYA+IGD++VAVIKEA+PNTPLERSEVIRAVI
Sbjct: 3 QPQTYLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKEAIPNTPLERSEVIRAVI 62
Query: 389 VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 210
VRTCKELKR+NG II+YDDNAAVVIDQEGNPKGTR+F AI RELRQ NFTKIVSLAPE+L
Sbjct: 63 VRTCKELKRNNGTIIRYDDNAAVVIDQEGNPKGTRVFGAIPRELRQLNFTKIVSLAPEVL 122
>gb|AAL35833.1|AF441853_1 RBL1 [Cucumis sativus]
Length = 122
Score = 214 bits (545), Expect = 6e-55
Identities = 107/120 (89%), Positives = 116/120 (96%)
Frame = -3
Query: 569 QPQTHLNVADNSGARKLMCIRIIGASNRRYAYIGDIVVAVIKEAVPNTPLERSEVIRAVI 390
QPQT LNVADNSGAR+LMCIRIIGASNRRYA+IGD++VAVIK+AVPNTPLERSEVIRAVI
Sbjct: 3 QPQTLLNVADNSGARELMCIRIIGASNRRYAHIGDVIVAVIKKAVPNTPLERSEVIRAVI 62
Query: 389 VRTCKELKRSNGIIIQYDDNAAVVIDQEGNPKGTRIFCAIARELRQFNFTKIVSLAPEIL 210
VRTCKELKR NG+II+YDDNAAVVIDQEGNPKGTRIF AIARELRQ NFTKI+SLAPE+L
Sbjct: 63 VRTCKELKRENGMIIRYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIISLAPEVL 122
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,998,463
Number of Sequences: 1393205
Number of extensions: 8408816
Number of successful extensions: 23207
Number of sequences better than 10.0: 284
Number of HSP's better than 10.0 without gapping: 21657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23045
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
