Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005191A_C01 KMC005191A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197258.1| putative protein; protein id: At5g17560.1, supp... 144 1e-33
ref|ZP_00115247.1| hypothetical protein [Synechococcus sp. WH 8102] 52 4e-06
ref|NP_521075.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solan... 50 2e-05
ref|NP_712291.1| BolA protein [Leptospira interrogans serovar la... 50 2e-05
gb|AAO42209.1| unknown protein [Arabidopsis thaliana] 49 5e-05
>ref|NP_197258.1| putative protein; protein id: At5g17560.1, supported by cDNA: 9667.
[Arabidopsis thaliana] gi|11346181|pir||T51460
hypothetical protein K10A8_40 - Arabidopsis thaliana
gi|9755781|emb|CAC01900.1| putative protein [Arabidopsis
thaliana] gi|21618086|gb|AAM67136.1| unknown
[Arabidopsis thaliana]
Length = 177
Score = 144 bits (362), Expect = 1e-33
Identities = 71/93 (76%), Positives = 82/93 (87%)
Frame = -3
Query: 528 FSSRATNINDAGSVDLPLMQSMEKKIKEQLNADSVIVKDAYGDGRHVSIDVVSTAFEGQS 349
FS++++ INDAGS+D LMQSME KIKEQLNA+SV V D GDGRHV I+VVS+AFEGQS
Sbjct: 84 FSTKSSQINDAGSIDQTLMQSMELKIKEQLNAESVTVTDMSGDGRHVCINVVSSAFEGQS 143
Query: 348 AVNRQRLVYKAIWEELQSTVHAVDQMTTSTPAE 250
AVNRQR+VYKAIWEELQ+ VHAVDQMTT TP+E
Sbjct: 144 AVNRQRMVYKAIWEELQNVVHAVDQMTTKTPSE 176
>ref|ZP_00115247.1| hypothetical protein [Synechococcus sp. WH 8102]
Length = 82
Score = 52.4 bits (124), Expect = 4e-06
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Frame = -3
Query: 468 SMEKKIKEQLNADSVIVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRLVYKAIWEELQS-T 292
++E I+ + V V+D G G H+ + VVS AF+G S + + +LVY A+ +EL S
Sbjct: 6 AVEAAIQRSIPDAKVTVEDLTGGGDHLQVSVVSVAFQGLSRIRQHQLVYGALQQELASEA 65
Query: 291 VHAVDQMTTSTPAEA 247
+HA+ +TT+TP ++
Sbjct: 66 IHAL-ALTTATPTDS 79
>ref|NP_521075.1| CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
gi|17429977|emb|CAD16661.1| CONSERVED HYPOTHETICAL
PROTEIN [Ralstonia solanacearum]
Length = 78
Score = 49.7 bits (117), Expect = 2e-05
Identities = 27/78 (34%), Positives = 47/78 (59%)
Frame = -3
Query: 483 LPLMQSMEKKIKEQLNADSVIVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRLVYKAIWEE 304
LP + +++ I+ L + + V+ GDG+H +VS FEG+ + R +LVY A+ +
Sbjct: 2 LPTPEQIKQYIEAGLPCEHLEVE---GDGQHFFATIVSAQFEGKRLIQRHQLVYAALGDR 58
Query: 303 LQSTVHAVDQMTTSTPAE 250
+++ +HA+ M T TPAE
Sbjct: 59 MRAEIHAL-SMKTLTPAE 75
>ref|NP_712291.1| BolA protein [Leptospira interrogans serovar lai str. 56601]
gi|24195819|gb|AAN49309.1|AE011382_10 BolA protein
[Leptospira interrogans serovar lai str. 56601]
Length = 83
Score = 49.7 bits (117), Expect = 2e-05
Identities = 23/65 (35%), Positives = 38/65 (58%)
Frame = -3
Query: 474 MQSMEKKIKEQLNADSVIVKDAYGDGRHVSIDVVSTAFEGQSAVNRQRLVYKAIWEELQS 295
+ ++ KI+ L V + D Y DG H+ V+ FEG+S + + R+VY+ + EEL+
Sbjct: 11 IDEIKNKIESGLPDSKVTILDPYKDGVHIKAIVIYKGFEGKSILEQHRMVYETLKEELKQ 70
Query: 294 TVHAV 280
VHA+
Sbjct: 71 EVHAL 75
>gb|AAO42209.1| unknown protein [Arabidopsis thaliana]
Length = 371
Score = 48.5 bits (114), Expect = 5e-05
Identities = 32/103 (31%), Positives = 56/103 (54%), Gaps = 11/103 (10%)
Frame = -3
Query: 525 SSRATNINDAGSVDLPLMQSMEKKIKE-QLNADSV--------IVKDAYGDG--RHVSID 379
S +N+ GS + + + +EK++ +L + V V+ + GD H ++
Sbjct: 269 SESGSNVVALGSRGMRIREKLEKELDPVELEVEDVSYQHAGHAAVRGSAGDDGETHFNLR 328
Query: 378 VVSTAFEGQSAVNRQRLVYKAIWEELQSTVHAVDQMTTSTPAE 250
+VS AF+G+S V R RL+Y + +EL+S +HA+ + TPAE
Sbjct: 329 IVSDAFQGKSLVKRHRLIYDLLQDELKSGLHAL-SIVAKTPAE 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 417,277,663
Number of Sequences: 1393205
Number of extensions: 8202643
Number of successful extensions: 21404
Number of sequences better than 10.0: 106
Number of HSP's better than 10.0 without gapping: 20976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21386
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
