Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005189A_C01 KMC005189A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA82391.1| ESTs C99174(E10437),D22295(C10709) correspond to... 152 3e-36
ref|NP_196295.1| KH domain/zinc finger protein; protein id: At5g... 142 4e-33
gb|AAM63810.1| unknown [Arabidopsis thaliana] 142 4e-33
dbj|BAB01961.1| contains similarity to unknown protein~dbj|BAA82... 135 5e-31
ref|NP_566412.1| KH domain/zinc finger protein; protein id: At3g... 135 5e-31
>dbj|BAA82391.1| ESTs C99174(E10437),D22295(C10709) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana BAC
genomic sequence. (AC005314) [Oryza sativa (japonica
cultivar-group)]
Length = 300
Score = 152 bits (384), Expect = 3e-36
Identities = 76/114 (66%), Positives = 90/114 (78%), Gaps = 3/114 (2%)
Frame = -2
Query: 577 ISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMV 398
IS++ASLAG IIG+ GVN+KQI RVTGAKL+IR+H+SD NLKNIELEG+FDQI ASAMV
Sbjct: 175 ISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNASAMV 234
Query: 397 HELILSVSSVSGPPAK---NFSSQHSAPGSNLKTKLCENFAQGSCTFGERCHFA 245
ELI+S+ + P K S + PGSN KTKLCENF +GSCTFG+RCHFA
Sbjct: 235 RELIVSIGGGAPPQGKKPVGGSHRGGGPGSNFKTKLCENFTKGSCTFGDRCHFA 288
Score = 31.2 bits (69), Expect = 9.7
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 325 PGSNLKTKLCE--NFAQGSCTFGERCHFASWNR 233
P +KT+LC N A+G C +G++CHFA R
Sbjct: 96 PTPTVKTRLCNKYNTAEG-CKWGDKCHFAHGER 127
>ref|NP_196295.1| KH domain/zinc finger protein; protein id: At5g06770.1, supported
by cDNA: 27460. [Arabidopsis thaliana]
gi|9759305|dbj|BAB09811.1| contains similarity to
unknown protein~dbj|BAA82391.1~gene_id:MPH15.13
[Arabidopsis thaliana] gi|26451009|dbj|BAC42611.1|
unknown protein [Arabidopsis thaliana]
gi|28950801|gb|AAO63324.1| At5g06770 [Arabidopsis
thaliana]
Length = 240
Score = 142 bits (357), Expect = 4e-33
Identities = 68/111 (61%), Positives = 86/111 (77%)
Frame = -2
Query: 577 ISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMV 398
IS++ASLAGAIIGK G++SKQICR TGAKLSI++H+ DPNLK IELEG+F+QIN AS MV
Sbjct: 118 ISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMV 177
Query: 397 HELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAQGSCTFGERCHFA 245
ELI + SV P PGSN KTK+C+ +++G+CT+G+RCHFA
Sbjct: 178 RELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKICDRYSKGNCTYGDRCHFA 228
>gb|AAM63810.1| unknown [Arabidopsis thaliana]
Length = 240
Score = 142 bits (357), Expect = 4e-33
Identities = 68/111 (61%), Positives = 86/111 (77%)
Frame = -2
Query: 577 ISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMV 398
IS++ASLAGAIIGK G++SKQICR TGAKLSI++H+ DPNLK IELEG+F+QIN AS MV
Sbjct: 118 ISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVASGMV 177
Query: 397 HELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAQGSCTFGERCHFA 245
ELI + SV P PGSN KTK+C+ +++G+CT+G+RCHFA
Sbjct: 178 RELIGRLGSVKKPQGIGGPEGKPHPGSNYKTKICDRYSKGNCTYGDRCHFA 228
>dbj|BAB01961.1| contains similarity to unknown
protein~dbj|BAA82391.1~gene_id:T23B7.7 [Arabidopsis
thaliana]
Length = 231
Score = 135 bits (339), Expect = 5e-31
Identities = 69/118 (58%), Positives = 88/118 (74%), Gaps = 8/118 (6%)
Frame = -2
Query: 574 SINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVH 395
S++ASLAGAIIGK GV+SKQICR TG KLSI++H+ DPNLKNI LEG+ +QI++ASAMV
Sbjct: 102 SVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVK 161
Query: 394 ELILSVSSVS-GPPAKNF-------SSQHSAPGSNLKTKLCENFAQGSCTFGERCHFA 245
+LI ++S + PP S PGSN KTK+CE F++G+CTFG+RCHFA
Sbjct: 162 DLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFA 219
>ref|NP_566412.1| KH domain/zinc finger protein; protein id: At3g12130.1 [Arabidopsis
thaliana] gi|12322002|gb|AAG51040.1|AC069473_2 unknown
protein; 15726-17646 [Arabidopsis thaliana]
gi|21553871|gb|AAM62964.1| unknown [Arabidopsis
thaliana]
Length = 248
Score = 135 bits (339), Expect = 5e-31
Identities = 69/118 (58%), Positives = 88/118 (74%), Gaps = 8/118 (6%)
Frame = -2
Query: 574 SINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVH 395
S++ASLAGAIIGK GV+SKQICR TG KLSI++H+ DPNLKNI LEG+ +QI++ASAMV
Sbjct: 119 SVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQISEASAMVK 178
Query: 394 ELILSVSSVS-GPPAKNF-------SSQHSAPGSNLKTKLCENFAQGSCTFGERCHFA 245
+LI ++S + PP S PGSN KTK+CE F++G+CTFG+RCHFA
Sbjct: 179 DLIGRLNSAAKKPPGGGLGGGGGMGSEGKPHPGSNFKTKICERFSKGNCTFGDRCHFA 236
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,273,220
Number of Sequences: 1393205
Number of extensions: 9430968
Number of successful extensions: 21697
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 19821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21668
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
