Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005188A_C01 KMC005188A_c01
(760 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63236.1| putative mitochondrial dicarboxylate carrier prot... 216 3e-55
ref|NP_179836.1| mitochondrial carrier protein family; protein i... 213 2e-54
ref|NP_194188.1| mitochondrial carrier protein family; protein i... 211 1e-53
gb|AAK44155.1|AF370340_1 putative mitochondrial dicarboxylate ca... 209 3e-53
ref|NP_196509.1| mitochondrial carrier protein family; protein i... 177 1e-43
>gb|AAM63236.1| putative mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana]
Length = 313
Score = 216 bits (550), Expect = 3e-55
Identities = 120/174 (68%), Positives = 136/174 (77%), Gaps = 3/174 (1%)
Frame = +3
Query: 246 MGLKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGEANAAPKPVQ-QLRPALAFQNGSTIH 422
MGLKGFAEGGIASI+AGCSTHPLDLIKVRMQLQGE+ P+Q LRPALAFQ +T++
Sbjct: 1 MGLKGFAEGGIASIVAGCSTHPLDLIKVRMQLQGES----APIQTNLRPALAFQTSTTVN 56
Query: 423 VAAHPHSPPPPPMPQPRVGPISVGVRLVQQEGLRALFSGVSATVLRQMLYSTTRMGLYDI 602
PP+ RVG I VG RL+++EG+RALFSGVSATVLRQ LYSTTRMGLYDI
Sbjct: 57 A---------PPL---RVGVIGVGSRLIREEGMRALFSGVSATVLRQTLYSTTRMGLYDI 104
Query: 603 LKQKWSNGG--NMPLSRKIEAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQR 758
+K +W++ G MPL +KI AG IAG IGAAVGNPADVAMVRMQADGRLP R
Sbjct: 105 IKGEWTDPGTKTMPLMKKIGAGAIAGAIGAAVGNPADVAMVRMQADGRLPLTDR 158
>ref|NP_179836.1| mitochondrial carrier protein family; protein id: At2g22500.1,
supported by cDNA: 20723., supported by cDNA:
gi_13877658, supported by cDNA: gi_13878154 [Arabidopsis
thaliana] gi|25295876|pir||D84613 hypothetical protein
At2g22500 [imported] - Arabidopsis thaliana
gi|4544443|gb|AAD22351.1| putative mitochondrial
dicarboxylate carrier protein [Arabidopsis thaliana]
gi|13877659|gb|AAK43907.1|AF370588_1 putative
mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana] gi|23297154|gb|AAN13106.1| putative
mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana]
Length = 313
Score = 213 bits (542), Expect = 2e-54
Identities = 119/174 (68%), Positives = 135/174 (77%), Gaps = 3/174 (1%)
Frame = +3
Query: 246 MGLKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGEANAAPKPVQ-QLRPALAFQNGSTIH 422
MGLKGFAEGGIASI+AGCSTHPLDLIKVRMQLQGE+ P+Q LRPALAFQ +T++
Sbjct: 1 MGLKGFAEGGIASIVAGCSTHPLDLIKVRMQLQGES----APIQTNLRPALAFQTSTTVN 56
Query: 423 VAAHPHSPPPPPMPQPRVGPISVGVRLVQQEGLRALFSGVSATVLRQMLYSTTRMGLYDI 602
PP+ RVG I VG RL+++EG+RALFSGVSATVLRQ LYSTTRMGLYDI
Sbjct: 57 A---------PPL---RVGVIGVGSRLIREEGMRALFSGVSATVLRQTLYSTTRMGLYDI 104
Query: 603 LKQKWSN--GGNMPLSRKIEAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQR 758
+K +W++ MPL +KI AG IAG IGAAVGNPADVAMVRMQADGRLP R
Sbjct: 105 IKGEWTDPETKTMPLMKKIGAGAIAGAIGAAVGNPADVAMVRMQADGRLPLTDR 158
>ref|NP_194188.1| mitochondrial carrier protein family; protein id: At4g24570.1,
supported by cDNA: 119476., supported by cDNA:
gi_14596142 [Arabidopsis thaliana]
gi|7488415|pir||T05577 uncoupling protein homolog
F22K18.230 - Arabidopsis thaliana
gi|4220533|emb|CAA23006.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
gi|7269307|emb|CAB79367.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
gi|14596143|gb|AAK68799.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
gi|21537077|gb|AAM61418.1| putative mitochondrial
uncoupling protein [Arabidopsis thaliana]
Length = 313
Score = 211 bits (536), Expect = 1e-53
Identities = 115/173 (66%), Positives = 132/173 (75%), Gaps = 2/173 (1%)
Frame = +3
Query: 246 MGLKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGEANAAPKPVQQLRPALAFQNGSTIHV 425
MG+K F EGGIAS+IAGCSTHPLDLIKVR+QL GEA + V LRPALAF N S
Sbjct: 1 MGVKSFVEGGIASVIAGCSTHPLDLIKVRLQLHGEAPSTTT-VTLLRPALAFPNSS---- 55
Query: 426 AAHPHSPPPPPMPQPRVGPISVGVRLVQQEGLRALFSGVSATVLRQMLYSTTRMGLYDIL 605
P + P+VGPIS+G+ +V+ EG ALFSGVSAT+LRQ LYSTTRMGLY++L
Sbjct: 56 ---PAAFLETTSSVPKVGPISLGINIVKSEGAAALFSGVSATLLRQTLYSTTRMGLYEVL 112
Query: 606 KQKWSN--GGNMPLSRKIEAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQR 758
K KW++ G + LSRKI AGL+AGGIGAAVGNPADVAMVRMQADGRLP AQR
Sbjct: 113 KNKWTDPESGKLNLSRKIGAGLVAGGIGAAVGNPADVAMVRMQADGRLPLAQR 165
>gb|AAK44155.1|AF370340_1 putative mitochondrial dicarboxylate carrier protein [Arabidopsis
thaliana]
Length = 313
Score = 209 bits (533), Expect = 3e-53
Identities = 118/174 (67%), Positives = 134/174 (76%), Gaps = 3/174 (1%)
Frame = +3
Query: 246 MGLKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGEANAAPKPVQ-QLRPALAFQNGSTIH 422
MGLKGFAEGGIASI+AGCSTHPLDLIKVRMQLQGE+ P+Q LRPALAFQ +T++
Sbjct: 1 MGLKGFAEGGIASIVAGCSTHPLDLIKVRMQLQGES----APIQTNLRPALAFQTSTTVN 56
Query: 423 VAAHPHSPPPPPMPQPRVGPISVGVRLVQQEGLRALFSGVSATVLRQMLYSTTRMGLYDI 602
PP+ RVG I VG RL+++EG+RALFSGVSATVLRQ LYSTTRMGLYDI
Sbjct: 57 A---------PPL---RVGVIGVGSRLIREEGMRALFSGVSATVLRQTLYSTTRMGLYDI 104
Query: 603 LKQKWSN--GGNMPLSRKIEAGLIAGGIGAAVGNPADVAMVRMQADGRLPAAQR 758
+K +W++ MPL +KI AG IA IGAAVGNPADVAMVRMQADGRLP R
Sbjct: 105 IKGEWTDPETKTMPLMKKIGAGAIAVAIGAAVGNPADVAMVRMQADGRLPLTDR 158
>ref|NP_196509.1| mitochondrial carrier protein family; protein id: At5g09470.1
[Arabidopsis thaliana] gi|9955534|emb|CAC05473.1|
mitochondrial carrier-like protein [Arabidopsis
thaliana]
Length = 337
Score = 177 bits (449), Expect = 1e-43
Identities = 104/188 (55%), Positives = 123/188 (65%), Gaps = 17/188 (9%)
Frame = +3
Query: 246 MGLKGFAEGGIASIIAGCSTHPLDLIKVRMQLQGE------ANAAPK-------PVQQLR 386
MG K F EGGIA+IIAG THPLDLIKVRMQLQGE N P PV+ R
Sbjct: 1 MGFKPFLEGGIAAIIAGALTHPLDLIKVRMQLQGEHSFSLDQNPNPNLSLDHNLPVKPYR 60
Query: 387 PALAFQN--GSTIHVAAHPHSPPPPPMPQPRVGPISVGVRLVQQEGLRALFSGVSATVLR 560
P A + GS + H H+P + + P +VG +V+ EG ALFSGVSAT+LR
Sbjct: 61 PVFALDSLIGSISLLPLHIHAPSSST--RSVMTPFAVGAHIVKTEGPAALFSGVSATILR 118
Query: 561 QMLYSTTRMGLYDILKQKWSN--GGNMPLSRKIEAGLIAGGIGAAVGNPADVAMVRMQAD 734
QMLYS TRMG+YD LK++W++ GN PL KI AGLIAG +G+ VGNPADVAMVRMQAD
Sbjct: 119 QMLYSATRMGIYDFLKRRWTDQLTGNFPLVTKITAGLIAGAVGSVVGNPADVAMVRMQAD 178
Query: 735 GRLPAAQR 758
G LP +R
Sbjct: 179 GSLPLNRR 186
Score = 43.5 bits (101), Expect = 0.003
Identities = 25/79 (31%), Positives = 40/79 (49%), Gaps = 3/79 (3%)
Frame = +3
Query: 498 RLVQQEGLRALFSGVSATVLRQMLYSTTRMGLYDILKQKWSNGGNMP---LSRKIEAGLI 668
R+ +QEG+ +L+ G TV R M+ + +++ YD +K+ GG + + A
Sbjct: 198 RIARQEGVSSLWRGSWLTVNRAMIVTASQLATYDHVKEILVAGGRGTPGGIGTHVAASFA 257
Query: 669 AGGIGAAVGNPADVAMVRM 725
AG + A NP DV RM
Sbjct: 258 AGIVAAVASNPIDVVKTRM 276
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 822,125,011
Number of Sequences: 1393205
Number of extensions: 22210567
Number of successful extensions: 166895
Number of sequences better than 10.0: 1386
Number of HSP's better than 10.0 without gapping: 100376
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151753
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
