Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005186A_C01 KMC005186A_c01
(1023 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, c... 357 2e-97
ref|NP_193016.1| probable photosystem I chain XI precursor; prot... 352 4e-96
emb|CAB53034.1| photosystem I subunit XI precursor [Arabidopsis ... 348 6e-95
dbj|BAA11677.1| subunit of photosystem I [Cucumis sativus] 344 1e-93
sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, c... 343 2e-93
>sp|Q41385|PSAL_SPIOL Photosystem I reaction center subunit XI, chloroplast precursor
(PSI-L) (PSI subunit V) gi|479684|pir||S35151
photosystem I chain XI precursor - spinach
gi|396275|emb|CAA45775.1| subunit XI of photosystem I
reaction center [Spinacia oleracea]
Length = 216
Score = 357 bits (916), Expect = 2e-97
Identities = 174/214 (81%), Positives = 192/214 (89%)
Frame = -2
Query: 992 AAASPMASQLKSTFTRPSLVTPTGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQPI 813
A SPMASQLKS FT +LV P G+SG + RR +FTV+AI++EKPTYQVIQP+
Sbjct: 3 ATTSPMASQLKSGFTTKALVVPKGISGPALRGFPSPRRHTSFTVRAIKTEKPTYQVIQPL 62
Query: 812 NGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPL 633
NGDPFIG LETPVTSSPL+AWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPL
Sbjct: 63 NGDPFIGGLETPVTSSPLIAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAGPL 122
Query: 632 RNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQLQTAD 453
RNTEYAG+AGSLAAAGLVVILS+CLT+YGI+SF EG+PS AP+LTLTGRKK PDQLQ+AD
Sbjct: 123 RNTEYAGAAGSLAAAGLVVILSMCLTMYGIASFKEGEPSIAPALTLTGRKKQPDQLQSAD 182
Query: 452 GWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 351
GWAKFTGGFFFGG+SGVTWA FL+YVLDLPYYFK
Sbjct: 183 GWAKFTGGFFFGGVSGVTWACFLMYVLDLPYYFK 216
>ref|NP_193016.1| probable photosystem I chain XI precursor; protein id: At4g12800.1,
supported by cDNA: 34400., supported by cDNA:
gi_16226621, supported by cDNA: gi_16649158, supported
by cDNA: gi_17933282, supported by cDNA: gi_20453408
[Arabidopsis thaliana] gi|18203449|sp|Q9SUI4|PSAL_ARATH
Photosystem I reaction center subunit XI, chloroplast
precursor (PSI-L) (PSI subunit V) gi|7488011|pir||T06638
photosystem I chain XI precursor - Arabidopsis thaliana
gi|4586256|emb|CAB40997.1| probable photosystem I chain
XI precursor [Arabidopsis thaliana]
gi|7267981|emb|CAB78322.1| probable photosystem I chain
XI precursor [Arabidopsis thaliana]
gi|16226622|gb|AAL16216.1|AF428447_1
AT4g12800/T20K18_150 [Arabidopsis thaliana]
gi|16649159|gb|AAL24431.1| probable photosystem I chain
XI precursor [Arabidopsis thaliana]
gi|17933283|gb|AAL48225.1|AF446350_1
AT4g12800/T20K18_150 [Arabidopsis thaliana]
gi|20453409|gb|AAM19943.1| AT4g12800/T20K18_150
[Arabidopsis thaliana] gi|21592939|gb|AAM64889.1|
probable photosystem I chain XI precursor [Arabidopsis
thaliana]
Length = 219
Score = 352 bits (904), Expect = 4e-96
Identities = 175/218 (80%), Positives = 195/218 (89%), Gaps = 4/218 (1%)
Frame = -2
Query: 992 AAASPMASQLKSTFTRPSL----VTPTGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQV 825
A+ASPMASQL+S+F+ SL P G+SG+ P + P++R +FTV+A++S+K T+QV
Sbjct: 3 ASASPMASQLRSSFSSASLSQRLAVPKGISGA-PFGVSPTKRVSSFTVRAVKSDKTTFQV 61
Query: 824 IQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVK 645
+QPINGDPFIGSLETPVTSSPL+AWYLSNLP YRTAVNPLLRGVEVGLAHGF LVGPFVK
Sbjct: 62 VQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVK 121
Query: 644 AGPLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQL 465
AGPLRNT YAGSAGSLAAAGLVVILS+CLTIYGISSF EG+PS APSLTLTGRKK PDQL
Sbjct: 122 AGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQL 181
Query: 464 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 351
QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPY+ K
Sbjct: 182 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219
>emb|CAB53034.1| photosystem I subunit XI precursor [Arabidopsis thaliana]
Length = 219
Score = 348 bits (894), Expect = 6e-95
Identities = 174/218 (79%), Positives = 193/218 (87%), Gaps = 4/218 (1%)
Frame = -2
Query: 992 AAASPMASQLKSTFTRPSL----VTPTGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQV 825
A+ASPMASQL+S+F+ SL P SG+ P + P++R +FTV+A++S+K T+QV
Sbjct: 3 ASASPMASQLRSSFSSASLSQRLAVPKQFSGA-PFGVSPTKRVSSFTVRAVKSDKTTFQV 61
Query: 824 IQPINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVK 645
+QPINGDPFIGSLETPVTSSPL+AWYLSNLP YRTAVNPLLRGVEVGLAHGF LVGPFVK
Sbjct: 62 VQPINGDPFIGSLETPVTSSPLIAWYLSNLPGYRTAVNPLLRGVEVGLAHGFFLVGPFVK 121
Query: 644 AGPLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQL 465
AGPLRNT YAGSAGSLAAAGLVVILS+CLTIYGISSF EG+PS APSLTLTGRKK PDQL
Sbjct: 122 AGPLRNTAYAGSAGSLAAAGLVVILSMCLTIYGISSFKEGEPSIAPSLTLTGRKKQPDQL 181
Query: 464 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 351
QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPY+ K
Sbjct: 182 QTADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYFVK 219
>dbj|BAA11677.1| subunit of photosystem I [Cucumis sativus]
Length = 217
Score = 344 bits (883), Expect = 1e-93
Identities = 169/216 (78%), Positives = 193/216 (89%), Gaps = 3/216 (1%)
Frame = -2
Query: 989 AASPMASQLKSTFTRPS---LVTPTGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQ 819
A SP+ASQL S+F + L++P GLS +SPL +P+R +FT++AIQ++KPT+QVIQ
Sbjct: 4 ATSPIASQLSSSFASSNTRALISPKGLS-ASPLRRIPTRTH-SFTIRAIQADKPTFQVIQ 61
Query: 818 PINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAG 639
PINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFVKAG
Sbjct: 62 PINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAG 121
Query: 638 PLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQLQT 459
PLRNT YAG AGSLAA GL+VILS+CLT+YG++SFNEG+PSTAPSLTLTGRKK PD LQT
Sbjct: 122 PLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQT 181
Query: 458 ADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 351
ADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYY K
Sbjct: 182 ADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217
>sp|Q39654|PSAL_CUCSA Photosystem I reaction center subunit XI, chloroplast precursor
(PSI-L) (PSI subunit V) gi|1363479|pir||JC4281
photosystem I protein psaL - cucumber
gi|801740|dbj|BAA09047.1| PsaL [Cucumis sativus]
Length = 217
Score = 343 bits (881), Expect = 2e-93
Identities = 169/216 (78%), Positives = 192/216 (88%), Gaps = 3/216 (1%)
Frame = -2
Query: 989 AASPMASQLKSTFTRPS---LVTPTGLSGSSPLHLLPSRRQFTFTVKAIQSEKPTYQVIQ 819
A SP ASQL S+F + L++P GLS +SPL +P+R +FT++AIQ++KPT+QVIQ
Sbjct: 4 ATSPTASQLSSSFASSNTRALISPKGLS-ASPLRRIPTRTH-SFTIRAIQADKPTFQVIQ 61
Query: 818 PINGDPFIGSLETPVTSSPLVAWYLSNLPAYRTAVNPLLRGVEVGLAHGFLLVGPFVKAG 639
PINGDPFIGSLETPVTSSPL+AWYLSNLPAYRTAV+PLLRG+EVGLAHGF LVGPFVKAG
Sbjct: 62 PINGDPFIGSLETPVTSSPLIAWYLSNLPAYRTAVSPLLRGIEVGLAHGFFLVGPFVKAG 121
Query: 638 PLRNTEYAGSAGSLAAAGLVVILSLCLTIYGISSFNEGDPSTAPSLTLTGRKKVPDQLQT 459
PLRNT YAG AGSLAA GL+VILS+CLT+YG++SFNEG+PSTAPSLTLTGRKK PD LQT
Sbjct: 122 PLRNTAYAGGAGSLAAGGLIVILSVCLTMYGVASFNEGEPSTAPSLTLTGRKKTPDPLQT 181
Query: 458 ADGWAKFTGGFFFGGISGVTWAYFLLYVLDLPYYFK 351
ADGWAKF+GGFFFGGISGV WAYFLLYVLDLPYY K
Sbjct: 182 ADGWAKFSGGFFFGGISGVIWAYFLLYVLDLPYYVK 217
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 941,841,532
Number of Sequences: 1393205
Number of extensions: 22739900
Number of successful extensions: 58126
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 54543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58056
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59601274632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
