Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005185A_C01 KMC005185A_c01
(769 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196245.1| B-type cyclin, putative; protein id: At5g06270.... 149 3e-35
ref|NP_566393.1| expressed protein; protein id: At3g11600.1, sup... 128 1e-28
dbj|BAB63806.1| P0423B08.15 [Oryza sativa (japonica cultivar-gro... 77 2e-13
ref|NP_197619.1| putative protein; protein id: At5g22270.1, supp... 68 2e-10
gb|AAM64981.1| unknown [Arabidopsis thaliana] 67 3e-10
>ref|NP_196245.1| B-type cyclin, putative; protein id: At5g06270.1 [Arabidopsis
thaliana] gi|9758407|dbj|BAB08949.1|
gb|AAF02129.1~gene_id:MHF15.21~similar to unknown
protein [Arabidopsis thaliana]
gi|21536580|gb|AAM60912.1| unknown [Arabidopsis
thaliana] gi|28392887|gb|AAO41880.1| putative B-type
cyclin [Arabidopsis thaliana] gi|28827636|gb|AAO50662.1|
putative B-type cyclin [Arabidopsis thaliana]
Length = 122
Score = 149 bits (377), Expect = 3e-35
Identities = 78/108 (72%), Positives = 89/108 (82%)
Frame = -2
Query: 765 MSHRNGSGPKPELKLNLSPPRVNHRRLESSPNRSATVSPTSPTTSCVSTELNQEEGNNNH 586
MS R+ PK ELKLNLSPP + RR+ SP+RSAT SPTSP +SCVS+E+NQ+E + +
Sbjct: 1 MSRRS---PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPSVRY 57
Query: 585 NHSTSPEEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDN 442
STSPE TSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLH+N
Sbjct: 58 --STSPE-TTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHEN 102
>ref|NP_566393.1| expressed protein; protein id: At3g11600.1, supported by cDNA:
18207. [Arabidopsis thaliana]
gi|6041814|gb|AAF02129.1|AC009918_1 hypothetical protein
[Arabidopsis thaliana] gi|21553924|gb|AAM63007.1|
unknown [Arabidopsis thaliana]
gi|26450081|dbj|BAC42160.1| unknown protein [Arabidopsis
thaliana] gi|28827726|gb|AAO50707.1| unknown protein
[Arabidopsis thaliana]
Length = 117
Score = 128 bits (321), Expect = 1e-28
Identities = 70/110 (63%), Positives = 78/110 (70%), Gaps = 2/110 (1%)
Frame = -2
Query: 765 MSHRNGSGPKPELKLNLSPP--RVNHRRLESSPNRSATVSPTSPTTSCVSTELNQEEGNN 592
MS RN +GPK EL+LNLSPP + + L SPNRS T SP+S CVS+E NQEE
Sbjct: 1 MSRRNKNGPKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSS----CVSSETNQEEN-- 54
Query: 591 NHNHSTSPEEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDN 442
E TSMVLVGCPRCLMYVMLS+DDPKCPKCKSTVLLDFL +N
Sbjct: 55 --------ETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQEN 96
>dbj|BAB63806.1| P0423B08.15 [Oryza sativa (japonica cultivar-group)]
Length = 129
Score = 77.4 bits (189), Expect = 2e-13
Identities = 44/115 (38%), Positives = 59/115 (51%), Gaps = 2/115 (1%)
Frame = -2
Query: 756 RNGSGPKPELKLNLSPPRVNHRRLESSPNR--SATVSPTSPTTSCVSTELNQEEGNNNHN 583
R G G P + +SP R S++ S SP +SCVS+E + +
Sbjct: 23 RGGGGGGPSATVRPGGDSGGVNGANTSPRRLSSSSSSTASPPSSCVSSEGSPDAAGGG-- 80
Query: 582 HSTSPEEATSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHDNNKRKS*KR 418
MVL GCPRC+MYVMLS +DP+CP+C S VLLDF D+ +R +R
Sbjct: 81 ------AGPPMVLAGCPRCMMYVMLSREDPRCPRCHSAVLLDFNDDDQRRPRQRR 129
>ref|NP_197619.1| putative protein; protein id: At5g22270.1, supported by cDNA:
35419., supported by cDNA: gi_15450475 [Arabidopsis
thaliana] gi|9757807|dbj|BAB08325.1|
gb|AAF02129.1~gene_id:MWD9.5~similar to unknown protein
[Arabidopsis thaliana] gi|15450476|gb|AAK96531.1|
AT5g22270/MWD9_5 [Arabidopsis thaliana]
gi|20466099|gb|AAM19971.1| AT5g22270/MWD9_5 [Arabidopsis
thaliana]
Length = 93
Score = 67.8 bits (164), Expect = 2e-10
Identities = 37/89 (41%), Positives = 53/89 (58%), Gaps = 1/89 (1%)
Frame = -2
Query: 690 RLESSPNRSATVSPTSPTTSCVSTELNQEEGNNNHNHSTSPEEATSMVLVGCPRCLMYVM 511
+L SP+ +++ S ++S S E G EA SMV+VGCP C+MY++
Sbjct: 14 KLNISPSLDSSLLTESSSSSLCSEEAEGGGG-----------EAKSMVVVGCPNCIMYII 62
Query: 510 LS-EDDPKCPKCKSTVLLDFLHDNNKRKS 427
S E+DP+CP+C S VLLDFL N+ +KS
Sbjct: 63 TSLENDPRCPRCNSHVLLDFLTGNHSKKS 91
>gb|AAM64981.1| unknown [Arabidopsis thaliana]
Length = 93
Score = 67.0 bits (162), Expect = 3e-10
Identities = 37/89 (41%), Positives = 52/89 (57%), Gaps = 1/89 (1%)
Frame = -2
Query: 690 RLESSPNRSATVSPTSPTTSCVSTELNQEEGNNNHNHSTSPEEATSMVLVGCPRCLMYVM 511
+L SP+ +++ S +S S E G EA SMV+VGCP C+MY++
Sbjct: 14 KLNISPSLDSSLLTESSLSSLCSEEAEGGGG-----------EAKSMVVVGCPNCIMYII 62
Query: 510 LS-EDDPKCPKCKSTVLLDFLHDNNKRKS 427
S E+DP+CP+C S VLLDFL N+ +KS
Sbjct: 63 TSLENDPRCPRCNSHVLLDFLTGNHSKKS 91
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,499,206
Number of Sequences: 1393205
Number of extensions: 13666955
Number of successful extensions: 54801
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 48339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53875
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
