Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005184A_C01 KMC005184A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P13089|AX28_SOYBN AUXIN-INDUCED PROTEIN AUX28 gi|81759|pir||A... 223 1e-57
emb|CAC84711.1| aux/IAA protein [Populus tremula x Populus tremu... 187 1e-46
gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremul... 181 8e-45
gb|AAC36584.1| putative IAA-related protein [Pisum sativum] 168 5e-41
gb|AAD32146.1|AF123508_1 Nt-iaa28 deduced protein [Nicotiana tab... 166 2e-40
>sp|P13089|AX28_SOYBN AUXIN-INDUCED PROTEIN AUX28 gi|81759|pir||A28993 auxin-induced
protein aux28 - soybean gi|169921|gb|AAA33945.1|
auxin-regulated protein (Aux28)
Length = 243
Score = 223 bits (569), Expect = 1e-57
Identities = 128/177 (72%), Positives = 134/177 (75%), Gaps = 8/177 (4%)
Frame = +3
Query: 162 MGFHETELRLGIGLPAAANNIEEVVRKRGFSETES-----ETDTVDLMLNLSSKEPTS-- 320
MGF ETELRLG LP E ++RKRGFSETE+ TVDLMLNLSSKE +
Sbjct: 1 MGFEETELRLG--LPGNGGTEEVLIRKRGFSETETGHEDESATTVDLMLNLSSKEAATTA 58
Query: 321 -AGADPSQKPKTNLQKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESGG 497
A ADP+ K KT L KEKTLLPADPAKPPAK QVVGWPPVRSFRKNMLAVQKSVGEES
Sbjct: 59 AAAADPTDKHKT-LPKEKTLLPADPAKPPAKTQVVGWPPVRSFRKNMLAVQKSVGEESEK 117
Query: 498 EKSNNGGGGGGASFVKVSMDGAPYLRKVDLKMYKSYRDLSDSLAKMFSSFTIGTCES 668
S N ASFVKVSMDGAPYLRKVDLKMYKSYR+LSDSL KMFSSFT G CES
Sbjct: 118 NSSPN------ASFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGKMFSSFTFGNCES 168
>emb|CAC84711.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 229
Score = 187 bits (475), Expect = 1e-46
Identities = 110/174 (63%), Positives = 121/174 (69%), Gaps = 1/174 (0%)
Frame = +3
Query: 150 KEIKMGFHETELRLGI-GLPAAANNIEEVVRKRGFSETESETDTVDLMLNLSSKEPTSAG 326
K KM F ETELRLG+ G E RKRGFSET VDL LNLSSKE G
Sbjct: 5 KGTKMRFEETELRLGLPGNGGGGTEGGEFARKRGFSET------VDLKLNLSSKE---GG 55
Query: 327 ADPSQKPKTNLQKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESGGEKS 506
DP+ + ++EK LL DPAKPPAKAQVVGWPPVRSFRKNMLAVQKS S ++S
Sbjct: 56 IDPNHE---KTRREKNLLATDPAKPPAKAQVVGWPPVRSFRKNMLAVQKS----STDQES 108
Query: 507 NNGGGGGGASFVKVSMDGAPYLRKVDLKMYKSYRDLSDSLAKMFSSFTIGTCES 668
N GG A+FVKVSMDGAPYLRKVDL MYK+Y +LSD+L KMFSSFTIG C S
Sbjct: 109 TNKVPGGNATFVKVSMDGAPYLRKVDLNMYKTYHELSDALGKMFSSFTIGNCGS 162
>gb|AAM21317.1|AF373100_1 auxin-regulated protein [Populus tremula x Populus tremuloides]
Length = 249
Score = 181 bits (459), Expect = 8e-45
Identities = 106/174 (60%), Positives = 126/174 (71%), Gaps = 5/174 (2%)
Frame = +3
Query: 162 MGFHETELRLGIGLPAAANNIEEVVR---KRGFSETESETDTVDLMLNLSSKEPTSAGAD 332
M F ETELRLG+ + N E + KRGFSET VDL LNLS+KE G D
Sbjct: 16 MNFEETELRLGLPGGVSNGNDSEAAKSNGKRGFSET------VDLKLNLSTKE---TGKD 66
Query: 333 PSQKPKTNLQKEKTLLPA--DPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESGGEKS 506
S + K + KEKT+ P DPAKPP+KAQVVGWPP+RSFRKN++AVQK+ +E GEK+
Sbjct: 67 GSDQEKV-VMKEKTVAPRPNDPAKPPSKAQVVGWPPIRSFRKNVMAVQKNSNDE--GEKA 123
Query: 507 NNGGGGGGASFVKVSMDGAPYLRKVDLKMYKSYRDLSDSLAKMFSSFTIGTCES 668
++ G G A+FVKVSMDGAPYLRKVDLK+YKSYR+LSD+L KMFSSFTIG C S
Sbjct: 124 SSSGATG-AAFVKVSMDGAPYLRKVDLKLYKSYRELSDALGKMFSSFTIGNCGS 176
>gb|AAC36584.1| putative IAA-related protein [Pisum sativum]
Length = 167
Score = 168 bits (426), Expect = 5e-41
Identities = 100/154 (64%), Positives = 112/154 (71%), Gaps = 8/154 (5%)
Frame = +3
Query: 231 VVRKRGFSETESETD------TVDLMLNLSSKEPTSAGADPSQKPKTNLQKEKTLLPADP 392
VV KRGFSETESE++ TVDL LNLS KE ADP KPK EK+LL +D
Sbjct: 2 VVSKRGFSETESESESESEITTVDLKLNLSPKE---GAADPQLKPK-----EKSLLVSDS 53
Query: 393 A-KPPAKAQVVGWPPVRSFRKNMLAVQKSVG-EESGGEKSNNGGGGGGASFVKVSMDGAP 566
KPPAKAQVVGWPPVRSFRKNM A QKS+G E +KS++G SFVKVSMDGAP
Sbjct: 54 GTKPPAKAQVVGWPPVRSFRKNMFAGQKSIGGSEETTKKSSDGSNA--ISFVKVSMDGAP 111
Query: 567 YLRKVDLKMYKSYRDLSDSLAKMFSSFTIGTCES 668
YLRK+DLKMYKSY +LSD+LAKMF+S T G CES
Sbjct: 112 YLRKIDLKMYKSYPELSDALAKMFNSITNGNCES 145
>gb|AAD32146.1|AF123508_1 Nt-iaa28 deduced protein [Nicotiana tabacum]
Length = 240
Score = 166 bits (421), Expect = 2e-40
Identities = 96/166 (57%), Positives = 110/166 (65%), Gaps = 3/166 (1%)
Frame = +3
Query: 174 ETELRLGIGLPAAANNIEEVVR---KRGFSETESETDTVDLMLNLSSKEPTSAGADPSQK 344
ETELRLG+ N E + KR FSET VDL LNLSSK+ T
Sbjct: 19 ETELRLGLRSAINGNEGEMTSKNNGKRVFSET------VDLKLNLSSKDSTV------DN 66
Query: 345 PKTNLQKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESGGEKSNNGGGG 524
N++++K + P DPAKPPAKAQVVGWPPVRSFRKN+L VQK+ N G
Sbjct: 67 QVDNIKEKKNIAPTDPAKPPAKAQVVGWPPVRSFRKNVLTVQKN-------STGNGESSG 119
Query: 525 GGASFVKVSMDGAPYLRKVDLKMYKSYRDLSDSLAKMFSSFTIGTC 662
GGA+FVKVS+DGAPYLRKVDLKMYKSY+ LSD+L KMFSSFTIG C
Sbjct: 120 GGAAFVKVSVDGAPYLRKVDLKMYKSYQQLSDALGKMFSSFTIGNC 165
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 620,054,491
Number of Sequences: 1393205
Number of extensions: 14591437
Number of successful extensions: 107042
Number of sequences better than 10.0: 235
Number of HSP's better than 10.0 without gapping: 63903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95365
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
