Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005179A_C01 KMC005179A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S60608 chlorophyll a/b-binding protein type II precursor, p... 197 6e-50
ref|NP_191706.1| light-harvesting chlorophyll a/b binding protei... 197 8e-50
pir||T50550 PS I antenna protein Lhca2 [imported] - Arabidopsis ... 197 8e-50
ref|NP_198197.1| light-harvesting chlorophyll a/b binding protei... 196 2e-49
sp|P13869|CB12_PETHY Chlorophyll A-B binding protein, chloroplas... 195 3e-49
>pir||S60608 chlorophyll a/b-binding protein type II precursor, photosystem I -
garden pea gi|602359|emb|CAA57492.1| Type II chlorophyll
a/b binding protein from photosystem I [Pisum sativum]
Length = 269
Score = 197 bits (502), Expect = 6e-50
Identities = 90/92 (97%), Positives = 91/92 (98%)
Frame = -3
Query: 586 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWF 407
NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGS SPQKLKELRTKEIKNGRLAMLAVMGAWF
Sbjct: 178 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWF 237
Query: 406 QHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 311
QHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 238 QHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 269
Score = 33.1 bits (74), Expect = 2.7
Identities = 20/54 (37%), Positives = 25/54 (46%)
Frame = -3
Query: 544 DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 383
D PG FDPLG GS P+ L+ E+ + R AML G + T G
Sbjct: 78 DGSLPGDFGFDPLGLGS-DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLG 130
>ref|NP_191706.1| light-harvesting chlorophyll a/b binding protein; protein id:
At3g61470.1, supported by cDNA: 123159., supported by
cDNA: gi_15451179, supported by cDNA: gi_17529285,
supported by cDNA: gi_18377463, supported by cDNA:
gi_4741939 [Arabidopsis thaliana]
gi|11277629|pir||T47939 Lhca2 protein - Arabidopsis
thaliana gi|6850838|emb|CAB71077.1| Lhca2 protein
[Arabidopsis thaliana]
Length = 257
Score = 197 bits (501), Expect = 8e-50
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = -3
Query: 586 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWF 407
NTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP KLKELRTKEIKNGRLAMLAVMGAWF
Sbjct: 166 NTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWF 225
Query: 406 QHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 311
QHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 226 QHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>pir||T50550 PS I antenna protein Lhca2 [imported] - Arabidopsis thaliana
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein
[Arabidopsis thaliana] gi|15451180|gb|AAK96861.1| Lhca2
protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein
[Arabidopsis thaliana] gi|18377464|gb|AAL66898.1| Lhca2
protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis
thaliana]
Length = 257
Score = 197 bits (501), Expect = 8e-50
Identities = 89/92 (96%), Positives = 91/92 (98%)
Frame = -3
Query: 586 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWF 407
NTDP+FPNNKLTGTDVGYPGGLWFDPLGWGSGSP KLKELRTKEIKNGRLAMLAVMGAWF
Sbjct: 166 NTDPVFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWF 225
Query: 406 QHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 311
QHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 226 QHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 257
>ref|NP_198197.1| light-harvesting chlorophyll a/b binding protein; protein id:
At5g28450.1 [Arabidopsis thaliana]
Length = 173
Score = 196 bits (498), Expect = 2e-49
Identities = 87/92 (94%), Positives = 91/92 (98%)
Frame = -3
Query: 586 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWF 407
NTDP+FPNNKLTGTD+GYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWF
Sbjct: 82 NTDPVFPNNKLTGTDIGYPGGLWFDPLGWGSGSPTKIKELRTKEIKNGRLAMLAVMGAWF 141
Query: 406 QHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 311
QHIYTGTGPIDNLFAHLADPGHAT+FAAFTPK
Sbjct: 142 QHIYTGTGPIDNLFAHLADPGHATIFAAFTPK 173
>sp|P13869|CB12_PETHY Chlorophyll A-B binding protein, chloroplast precursor (LHCI type
II CAB) gi|82243|pir||S00442 chlorophyll a/b-binding
protein precursor - garden petunia
gi|169214|gb|AAA33711.1| chlorophyll binding protein
precursor gi|226259|prf||1503272A chlorophyll binding
protein
Length = 270
Score = 195 bits (496), Expect = 3e-49
Identities = 88/92 (95%), Positives = 91/92 (98%)
Frame = -3
Query: 586 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWF 407
NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSP K+KELRTKEIKNGRLAMLAVMGAWF
Sbjct: 179 NTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWF 238
Query: 406 QHIYTGTGPIDNLFAHLADPGHATVFAAFTPK 311
QHIYTGTGPIDNLFAHLADPGHAT+FAAF+PK
Sbjct: 239 QHIYTGTGPIDNLFAHLADPGHATIFAAFSPK 270
Score = 35.4 bits (80), Expect = 0.54
Identities = 21/57 (36%), Positives = 27/57 (46%)
Frame = -3
Query: 544 DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPID 374
D PG FDPLG GS P+ LK E+ + R AML G + T G ++
Sbjct: 79 DGSLPGDFGFDPLGLGS-DPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLN 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,832,657
Number of Sequences: 1393205
Number of extensions: 12985615
Number of successful extensions: 37115
Number of sequences better than 10.0: 400
Number of HSP's better than 10.0 without gapping: 35370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37009
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
