Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005176A_C01 KMC005176A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175523.1| unknown protein; protein id: At1g51115.1 [Arabi... 85 6e-16
gb|AAM65225.1| unknown [Arabidopsis thaliana] gi|26452116|dbj|BA... 85 6e-16
ref|NP_730770.1| CG32461-PA [Drosophila melanogaster] gi|2309433... 32 3.3
ref|NP_593512.1| MFS drug transporter of unknown specificity [Sc... 32 4.2
ref|NP_593548.1| MFS transporter [Schizosaccharomyces pombe] gi|... 32 5.5
>ref|NP_175523.1| unknown protein; protein id: At1g51115.1 [Arabidopsis thaliana]
gi|25373270|pir||E96548 unknown protein [imported] -
Arabidopsis thaliana
gi|12320787|gb|AAG50542.1|AC079828_13 unknown protein
[Arabidopsis thaliana]
Length = 110
Score = 84.7 bits (208), Expect = 6e-16
Identities = 37/72 (51%), Positives = 55/72 (76%)
Frame = -1
Query: 509 DILLGLKFSMTGNFVKIGSDMYEVTMDDAAIIGGAFGLPLHMDNKFVLELLFSDQKVRIS 330
+I+ +FSM G F+K S Y++ MDDAAIIGGAFG P+ + N L++L++D+K+RIS
Sbjct: 37 NIIPAFRFSMKGKFIKSESSTYDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRIS 96
Query: 329 RGYNEVLFVHIR 294
RG++ ++FVHIR
Sbjct: 97 RGFDNIIFVHIR 108
>gb|AAM65225.1| unknown [Arabidopsis thaliana] gi|26452116|dbj|BAC43147.1| unknown
protein [Arabidopsis thaliana]
gi|28950975|gb|AAO63411.1| At1g51115 [Arabidopsis
thaliana]
Length = 409
Score = 84.7 bits (208), Expect = 6e-16
Identities = 37/72 (51%), Positives = 55/72 (76%)
Frame = -1
Query: 509 DILLGLKFSMTGNFVKIGSDMYEVTMDDAAIIGGAFGLPLHMDNKFVLELLFSDQKVRIS 330
+I+ +FSM G F+K S Y++ MDDAAIIGGAFG P+ + N L++L++D+K+RIS
Sbjct: 336 NIIPAFRFSMKGKFIKSESSTYDLKMDDAAIIGGAFGYPVDITNNIELKILYTDEKMRIS 395
Query: 329 RGYNEVLFVHIR 294
RG++ ++FVHIR
Sbjct: 396 RGFDNIIFVHIR 407
>ref|NP_730770.1| CG32461-PA [Drosophila melanogaster] gi|23094339|gb|AAN12212.1|
CG32461-PA [Drosophila melanogaster]
Length = 252
Score = 32.3 bits (72), Expect = 3.3
Identities = 22/65 (33%), Positives = 33/65 (49%), Gaps = 3/65 (4%)
Frame = +3
Query: 297 NMYEKNFIVS---PANSHLLVTEQKLQDELVVHV*G*SKCATNYSCIIHGDLVHVGADFY 467
N E+N VS +NS L+ E++L EL S+ T Y C + G++ + +
Sbjct: 5 NSEEQNVAVSGWTKSNSPELIEEERLYTELDSEGRMISRTMTPYECQLEGEVEQLQEALF 64
Query: 468 KISSH 482
KISSH
Sbjct: 65 KISSH 69
>ref|NP_593512.1| MFS drug transporter of unknown specificity [Schizosaccharomyces
pombe] gi|12043562|emb|CAC19745.1| MFS drug transporter
of unknown specificity [Schizosaccharomyces pombe]
Length = 589
Score = 32.0 bits (71), Expect = 4.2
Identities = 18/58 (31%), Positives = 31/58 (53%)
Frame = -1
Query: 314 VLFVHIRSDSLR*TTNLYWFCI*PSPTTTLHCKLRDFIIVLVVAVTELVLLLLLKGNI 141
+ F+++ + L +++ + P PT + LRDF V +V +T V+L LL NI
Sbjct: 246 IFFINLPTGGLSLALLIFFLNLVPKPTVSFCVFLRDFDFVGIVTITTGVVLFLLGLNI 303
>ref|NP_593548.1| MFS transporter [Schizosaccharomyces pombe]
gi|1351690|sp|Q10072|YAN6_SCHPO Hypothetical protein
C3H1.06c in chromosome I gi|7492150|pir||T38738 major
facilitator homolog transporter - fission yeast
(Schizosaccharomyces pombe) gi|1103507|emb|CAA92259.1|
MFS transporter [Schizosaccharomyces pombe]
Length = 589
Score = 31.6 bits (70), Expect = 5.5
Identities = 16/58 (27%), Positives = 31/58 (52%)
Frame = -1
Query: 314 VLFVHIRSDSLR*TTNLYWFCI*PSPTTTLHCKLRDFIIVLVVAVTELVLLLLLKGNI 141
+ F+++ + L +++ + P PT + LRDF V ++ +T V+L L+ NI
Sbjct: 246 IFFINLPTGGLSLALLIFFLNLVPKPTVSFRVFLRDFDFVGIITITTGVVLFLVGLNI 303
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,571,052
Number of Sequences: 1393205
Number of extensions: 8899459
Number of successful extensions: 22547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22542
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
