Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005172A_C01 KMC005172A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO23085.1| putative leucine-rich repeat protein [Oryza sativ... 134 1e-30
pir||T07079 leucine-rich repeat protein LRP - tomato gi|1619300|... 107 8e-23
ref|NP_197608.1| leucine-rich repeat protein; protein id: At5g21... 103 2e-21
gb|AAO17321.1|AF466358_1 floral organ regulator 1 [Oryza sativa ... 99 3e-20
dbj|BAA87832.1| unnamed protein product [Oryza sativa (japonica ... 99 5e-20
>gb|AAO23085.1| putative leucine-rich repeat protein [Oryza sativa (japonica
cultivar-group)]
Length = 218
Score = 134 bits (336), Expect = 1e-30
Identities = 63/86 (73%), Positives = 71/86 (82%), Gaps = 1/86 (1%)
Frame = -1
Query: 560 GKIPNSFANLNSLKFLRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVDGNFGSF 381
G IP S + L SL+F+RLNNNKL GSIPREL L NLK+ D+SNNDLCGTIPVDG F +F
Sbjct: 133 GTIPKSLSKLGSLRFMRLNNNKLAGSIPRELAKLSNLKVIDLSNNDLCGTIPVDGPFSTF 192
Query: 380 PAESFE-NNQLNGPELKGLVPYDFGC 306
P SFE NN+LNGPEL+GLVPYDFGC
Sbjct: 193 PLRSFENNNRLNGPELQGLVPYDFGC 218
>pir||T07079 leucine-rich repeat protein LRP - tomato gi|1619300|emb|CAA64565.1|
LRR protein [Lycopersicon esculentum]
Length = 221
Score = 107 bits (268), Expect = 8e-23
Identities = 53/86 (61%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = -1
Query: 560 GKIPNSFANLNSLKFLRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVDGNFGSF 381
G IP S NL +L FLRLN+NKLTG IPRELT + +LK+ DVSNNDLCGTIP G F
Sbjct: 135 GTIPTSLGNLKNLVFLRLNDNKLTGPIPRELTSISSLKVVDVSNNDLCGTIPTSGPFEHI 194
Query: 380 PAESFENN-QLNGPELKGLVPYDFGC 306
P +FE+N +L GPEL GL YD C
Sbjct: 195 PLNNFEHNPRLEGPELLGLATYDTNC 220
Score = 38.1 bits (87), Expect = 0.075
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = -1
Query: 530 NSLKFLRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVD-GNFGSFPAESFENNQ 354
N + + L N+KL+G + EL L++L+ ++ N++ GTIP + GN S + NN
Sbjct: 73 NQVTRVDLGNSKLSGHLVPELGKLEHLQYLELYKNNIQGTIPKELGNLKSLISLDLYNNN 132
Query: 353 LNG 345
++G
Sbjct: 133 ISG 135
>ref|NP_197608.1| leucine-rich repeat protein; protein id: At5g21090.1, supported by
cDNA: gi_13358181, supported by cDNA: gi_13899096,
supported by cDNA: gi_20148426 [Arabidopsis thaliana]
gi|11762126|gb|AAG40341.1|AF324989_1 AT5g21090
[Arabidopsis thaliana]
gi|13899097|gb|AAK48970.1|AF370543_1 Unknown protein
[Arabidopsis thaliana] gi|20148427|gb|AAM10104.1|
unknown protein [Arabidopsis thaliana]
gi|27311823|gb|AAO00877.1| Unknown protein [Arabidopsis
thaliana] gi|29294060|gb|AAO73897.1| leucine rich repeat
protein (LRP), putative [Arabidopsis thaliana]
Length = 218
Score = 103 bits (256), Expect = 2e-21
Identities = 50/86 (58%), Positives = 61/86 (70%), Gaps = 1/86 (1%)
Frame = -1
Query: 560 GKIPNSFANLNSLKFLRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVDGNFGSF 381
G +P S L SL FLRLN+N+LTG IPR LT + +LK+ DVS+NDLCGTIP +G F
Sbjct: 132 GIVPTSLGKLKSLVFLRLNDNRLTGPIPRALTAIPSLKVVDVSSNDLCGTIPTNGPFAHI 191
Query: 380 PAESFENN-QLNGPELKGLVPYDFGC 306
P ++FENN +L GPEL GL YD C
Sbjct: 192 PLQNFENNPRLEGPELLGLASYDTNC 217
>gb|AAO17321.1|AF466358_1 floral organ regulator 1 [Oryza sativa (japonica cultivar-group)]
Length = 213
Score = 99.4 bits (246), Expect = 3e-20
Identities = 49/86 (56%), Positives = 58/86 (66%), Gaps = 1/86 (1%)
Frame = -1
Query: 560 GKIPNSFANLNSLKFLRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVDGNFGSF 381
G IP + L SL FLRLN N+LTG IPREL + +LK+ DVS+NDLCGTIP G F
Sbjct: 128 GTIPPTLGKLTSLVFLRLNGNRLTGPIPRELAGISSLKVVDVSSNDLCGTIPTSGPFEHI 187
Query: 380 PAESFENN-QLNGPELKGLVPYDFGC 306
P +FE N +L GPEL+GL YD C
Sbjct: 188 PLSNFEKNPRLEGPELQGLAVYDTNC 213
>dbj|BAA87832.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|11138057|dbj|BAB17730.1| putative leucine-rich repeat
protein LRP [Oryza sativa (japonica cultivar-group)]
Length = 212
Score = 98.6 bits (244), Expect = 5e-20
Identities = 47/86 (54%), Positives = 57/86 (65%), Gaps = 1/86 (1%)
Frame = -1
Query: 560 GKIPNSFANLNSLKFLRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVDGNFGSF 381
G IP L+SL FLRLN+N L G IPR+L + +LK+ DVSNNDLCGTIP G F
Sbjct: 127 GTIPKELGKLSSLVFLRLNDNSLNGPIPRDLAKISSLKVIDVSNNDLCGTIPTSGPFEHI 186
Query: 380 PAESFENN-QLNGPELKGLVPYDFGC 306
P +F+ N +L GPEL+GL YD C
Sbjct: 187 PLNNFDKNPRLEGPELQGLATYDTNC 212
Score = 37.4 bits (85), Expect = 0.13
Identities = 19/58 (32%), Positives = 34/58 (57%), Gaps = 1/58 (1%)
Frame = -1
Query: 515 LRLNNNKLTGSIPRELTHLKNLKIFDVSNNDLCGTIPVD-GNFGSFPAESFENNQLNG 345
L L N+ L+G + EL HL++L+ ++ N++ GTIP + G+ + + NN + G
Sbjct: 70 LDLGNSNLSGHLAPELGHLEHLQYLELYKNNIQGTIPAELGSLKNLISLDLYNNNITG 127
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,336,213
Number of Sequences: 1393205
Number of extensions: 8799362
Number of successful extensions: 30592
Number of sequences better than 10.0: 1288
Number of HSP's better than 10.0 without gapping: 22635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29440
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
