Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005168A_C01 KMC005168A_c01
(642 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567140.1| expressed protein; protein id: At3g63170.1, sup... 155 6e-37
dbj|BAC42664.1| unknown protein [Arabidopsis thaliana] gi|289507... 73 3e-12
ref|NP_718829.1| hypothetical protein [Shewanella oneidensis MR-... 38 0.13
dbj|BAA36552.1| chalcone isomerase [Citrus sinensis] 35 0.85
gb|AAO52389.1| hypothetical protein [Dictyostelium discoideum] 33 4.2
>ref|NP_567140.1| expressed protein; protein id: At3g63170.1, supported by cDNA:
4524., supported by cDNA: gi_17473779, supported by
cDNA: gi_20148594 [Arabidopsis thaliana]
gi|11283433|pir||T48106 hypothetical protein F16M2.20 -
Arabidopsis thaliana gi|7523399|emb|CAB86418.1|
hypothetical protein [Arabidopsis thaliana]
gi|17473780|gb|AAL38325.1| unknown protein [Arabidopsis
thaliana] gi|20148595|gb|AAM10188.1| unknown protein
[Arabidopsis thaliana] gi|21593803|gb|AAM65770.1|
unknown [Arabidopsis thaliana]
Length = 279
Score = 155 bits (391), Expect = 6e-37
Identities = 74/109 (67%), Positives = 92/109 (83%)
Frame = -3
Query: 640 IVYGKLSIRSVRSAFEESVGSRLQKYGGSDNKELLQRFTSQFKDEFKIPRGSVIHLSREK 461
IVYGKL+IRSVR+AF+ESVG+RL+K+GGSDN ELLQ FTS FKDE+KIPR S I L+++
Sbjct: 166 IVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDP 225
Query: 460 GHILRTSIDGQEVGSIQSKLLCRSLLDLYVGEEPFDKQAKEDIELNIAS 314
GH+L +I+G VGS++S LLCRS+LDLY+GEEPFDK A+ED N AS
Sbjct: 226 GHVLSVAIEGNHVGSVKSHLLCRSILDLYIGEEPFDKNAREDFLDNAAS 274
>dbj|BAC42664.1| unknown protein [Arabidopsis thaliana] gi|28950753|gb|AAO63300.1|
At2g26310 [Arabidopsis thaliana]
Length = 217
Score = 73.2 bits (178), Expect = 3e-12
Identities = 37/111 (33%), Positives = 61/111 (54%)
Frame = -3
Query: 634 YGKLSIRSVRSAFEESVGSRLQKYGGSDNKELLQRFTSQFKDEFKIPRGSVIHLSREKGH 455
Y L I +VR FE+S+ +RL K + L F S F+ + IP G++I R +
Sbjct: 106 YNGLKINTVRDVFEKSLRARLVKANPKTDFNCLNDFGSFFRQDIPIPAGTIIDFRRTEDG 165
Query: 454 ILRTSIDGQEVGSIQSKLLCRSLLDLYVGEEPFDKQAKEDIELNIASYLQK 302
L T I G +G+++SK LCR+ +Y+G+ P +Q KE+I + +++
Sbjct: 166 QLITEIGGNLIGAVRSKDLCRAFFGMYIGDVPVSEQTKEEIGRKVVGIIKR 216
>ref|NP_718829.1| hypothetical protein [Shewanella oneidensis MR-1]
gi|24349460|gb|AAN56273.1|AE015765_1 hypothetical
protein [Shewanella oneidensis MR-1]
Length = 186
Score = 37.7 bits (86), Expect = 0.13
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 4/105 (3%)
Frame = -3
Query: 640 IVYGKLSIRSVRSAFEESVGSRLQKYGGSDNKELLQ----RFTSQFKDEFKIPRGSVIHL 473
I G ++ +R A E +Y +DN +Q F + FKDE K +G L
Sbjct: 84 ITSGMITSEKMRDAIIEGF-----EYATADNTTDIQPQIDTFMALFKDEIK--QGDQFTL 136
Query: 472 SREKGHILRTSIDGQEVGSIQSKLLCRSLLDLYVGEEPFDKQAKE 338
K + +GQE +I+ ++ ++LL +++GE+P KE
Sbjct: 137 VANKSRGVTAYKNGQEQATIEGEMFRQALLKIWLGEKPAQASLKE 181
>dbj|BAA36552.1| chalcone isomerase [Citrus sinensis]
Length = 222
Score = 35.0 bits (79), Expect = 0.85
Identities = 25/90 (27%), Positives = 45/90 (49%), Gaps = 5/90 (5%)
Frame = -3
Query: 538 LQRFTSQFKDEFKIPRGSVIHLSREKGHILRT-----SIDGQEVGSIQSKLLCRSLLDLY 374
+++FT FKDE P GS I ++ G + + SI V I+S LL ++L+
Sbjct: 134 IEKFTEVFKDEI-FPPGSSILFTQSPGSLTISFSKDGSIPKDGVAVIESNLLSEAVLESM 192
Query: 373 VGEEPFDKQAKEDIELNIASYLQK*TVKLK 284
+G+ AK+ + +++ L + K+K
Sbjct: 193 IGKNGVSPAAKKSLAERLSALLNVTSDKMK 222
>gb|AAO52389.1| hypothetical protein [Dictyostelium discoideum]
Length = 432
Score = 32.7 bits (73), Expect = 4.2
Identities = 16/54 (29%), Positives = 31/54 (56%)
Frame = +1
Query: 124 KIVMRYD*THTTILKPKAYINKVKLITKRHETKITRGMELSKLTSVESMS*RRF 285
KI+++YD T + I K + + ++ I + +ET + EL KL ++E + + F
Sbjct: 244 KIILKYDNTISDIKKREEILEEINKIDRNNETGFNKLKELRKLVAIEFPNQKNF 297
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 494,603,061
Number of Sequences: 1393205
Number of extensions: 9786341
Number of successful extensions: 20754
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20750
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
