Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005163A_C01 KMC005163A_c01
(555 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42247.1| unknown protein [Arabidopsis thaliana] gi|288277... 160 7e-39
ref|NP_193963.1| hypothetical protein; protein id: At4g22320.1 [... 160 7e-39
ref|NP_200332.1| putative protein; protein id: At5g55210.1 [Arab... 105 4e-22
gb|AAH18688.1| similar to opioid growth factor receptor [Homo sa... 42 0.004
ref|NP_690423.1| Orf4 [Heliothis zea virus 1] gi|22671475|gb|AAN... 42 0.005
>dbj|BAC42247.1| unknown protein [Arabidopsis thaliana] gi|28827738|gb|AAO50713.1|
unknown protein [Arabidopsis thaliana]
Length = 238
Score = 160 bits (406), Expect = 7e-39
Identities = 85/180 (47%), Positives = 117/180 (64%), Gaps = 26/180 (14%)
Frame = +1
Query: 94 MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPS-------ASASAASSNSNTNHN 252
MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPS +S+ +A++ ++ +
Sbjct: 1 MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60
Query: 253 HSASNGNNGSHLLLYKWIPITQSQNAANANNTKEAPPEP------ADEPPRRKFIYIPVA 414
S S+G+NGSHLLLYKW P++Q+ N ++ P A++PPRR+F Y+P+A
Sbjct: 61 GSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPIA 120
Query: 415 VLEEQRNEAAENEAAEKVEDESK-----------PIDVDSSAAEPTQKNE--TLDDKPDI 555
VLEEQ+ E E E +K+E++ K +D D + E ++K +++KPDI
Sbjct: 121 VLEEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSEKKAEVEVEEKPDI 180
>ref|NP_193963.1| hypothetical protein; protein id: At4g22320.1 [Arabidopsis
thaliana] gi|7486827|pir||T04913 hypothetical protein
T10I14.150 - Arabidopsis thaliana
gi|2832682|emb|CAA16782.1| hypothetical protein
[Arabidopsis thaliana] gi|7269078|emb|CAB79187.1|
hypothetical protein [Arabidopsis thaliana]
Length = 237
Score = 160 bits (406), Expect = 7e-39
Identities = 85/180 (47%), Positives = 117/180 (64%), Gaps = 26/180 (14%)
Frame = +1
Query: 94 MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPS-------ASASAASSNSNTNHN 252
MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPS +S+ +A++ ++ +
Sbjct: 1 MEGVGARLGRSSTRYGPATVFTGPVRKWKKKWVHVSPSSKKDNNNSSSGSAAAAASVVNG 60
Query: 253 HSASNGNNGSHLLLYKWIPITQSQNAANANNTKEAPPEP------ADEPPRRKFIYIPVA 414
S S+G+NGSHLLLYKW P++Q+ N ++ P A++PPRR+F Y+P+A
Sbjct: 61 GSNSDGSNGSHLLLYKWAPLSQNGNGNEDGKSESNSPSEDTVATVAEDPPRRRFKYVPIA 120
Query: 415 VLEEQRNEAAENEAAEKVEDESK-----------PIDVDSSAAEPTQKNE--TLDDKPDI 555
VLEEQ+ E E E +K+E++ K +D D + E ++K +++KPDI
Sbjct: 121 VLEEQKKEITEIEEDDKIEEDDKIDEDNKVEQEDKVDEDKTVEESSEKKAEVEVEEKPDI 180
>ref|NP_200332.1| putative protein; protein id: At5g55210.1 [Arabidopsis thaliana]
gi|9758118|dbj|BAB08590.1|
gene_id:MCO15.16~pir||T04913~similar to unknown protein
[Arabidopsis thaliana]
Length = 168
Score = 105 bits (262), Expect = 4e-22
Identities = 65/156 (41%), Positives = 97/156 (61%), Gaps = 10/156 (6%)
Frame = +1
Query: 94 MEGVGARLGRSSTRY-GPAT--VFTGPVRKWKKKWVHVSPSASASAASSNSNTNHNHSAS 264
MEGVG+RL R+S+RY GPA VF+G VRKWKKKWV VS S+ +S SN +N ++
Sbjct: 1 MEGVGSRLSRTSSRYSGPAATAVFSGRVRKWKKKWVRVSTSSVGVFRASKSNGRNN--SN 58
Query: 265 NGNNGSHLLLYKWIPITQSQ-NAANANNTKEAPPEPADEPPRRKFIYIPVAVLEEQR--- 432
N N+ HLLL+KW P+T + A++AN + E +E P+R+F Y P+A+LE +
Sbjct: 59 NSNSPHHLLLHKWTPLTSATVTASDANGSGE-----TEESPKRRFRYAPIAMLEHREKVI 113
Query: 433 NEAAENEAAEKVEDES---KPIDVDSSAAEPTQKNE 531
++ +E E E+ + ES K +++D + + Q E
Sbjct: 114 SKDSEIEETEEFDTESPLPKAVELDMNLTDSDQTKE 149
>gb|AAH18688.1| similar to opioid growth factor receptor [Homo sapiens]
Length = 450
Score = 42.4 bits (98), Expect = 0.004
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 1/135 (0%)
Frame = +1
Query: 136 YGPATVFT-GPVRKWKKKWVHVSPSASASAASSNSNTNHNHSASNGNNGSHLLLYKWIPI 312
Y P+ F GP RK + + +S A+S NS T+ + A + N S +
Sbjct: 304 YTPSENFIWGPPRKEQSEGSKAQKMSSPLASSHNSQTSMHKKAKDSKNSSSAV------- 356
Query: 313 TQSQNAANANNTKEAPPEPADEPPRRKFIYIPVAVLEEQRNEAAENEAAEKVEDESKPID 492
N+ A + K AP EP +E R E NEAA+ E E+
Sbjct: 357 --HLNSKTAEDKKVAPKEPVEETDRPS---------PEPSNEAAKPRNTEDSNAENMNSQ 405
Query: 493 VDSSAAEPTQKNETL 537
+ + PT+K E++
Sbjct: 406 PEKTVTTPTEKKESV 420
>ref|NP_690423.1| Orf4 [Heliothis zea virus 1] gi|22671475|gb|AAN04302.1|AF451898_4
Orf4 [Heliothis zea virus 1]
Length = 974
Score = 42.0 bits (97), Expect = 0.005
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Frame = +1
Query: 154 FTGPVRKWKKKWVHVSPSASASAASSNSNTNHNHSASNGNNGSHLLLYKWIPITQSQNA- 330
+ PV K++ V +S S + SN+NTN N + ++ NN S + +Y + N+
Sbjct: 191 YAPPVNYGKRRRVSMSSMPSVPSVPSNANTNSNSNNNSNNNNSSISIYNGVKSNAKSNSK 250
Query: 331 ANANNTKEAPPEPADEPPRRKFIYIPVAVLEEQRNE 438
+N N P P I P L++ R +
Sbjct: 251 SNGTNVNSVHPPPTTTLANPCKIQAPTKNLDKIREQ 286
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.313 0.129 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 533,630,936
Number of Sequences: 1393205
Number of extensions: 13675384
Number of successful extensions: 107628
Number of sequences better than 10.0: 403
Number of HSP's better than 10.0 without gapping: 56858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85565
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
