Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005161A_C01 KMC005161A_c01
(541 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_524658.2| pericardine CG5700-PB gi|23096140|gb|AAF49980.2... 35 0.006
gb|AAF13280.1| pericardine [Drosophila melanogaster] 33 0.32
gb|ZP_00059112.1| hypothetical protein [Thermobifida fusca] 31 0.33
gb|ZP_00048906.1| hypothetical protein [Magnetospirillum magneto... 36 0.34
ref|NP_644814.1| GAS2-related protein [Homo sapiens] gi|21070344... 35 0.76
>ref|NP_524658.2| pericardine CG5700-PB gi|23096140|gb|AAF49980.2| CG5700-PB
[Drosophila melanogaster]
Length = 1713
Score = 35.4 bits (80), Expect = 0.44
Identities = 38/132 (28%), Positives = 55/132 (40%), Gaps = 9/132 (6%)
Frame = +2
Query: 170 GEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFI-FGEPGSWLTSFSKSLRSRGTRIWLTSF 346
G+PG GS P G G++P A G+PG + G +
Sbjct: 345 GQPGYGSQPGIGGQTGAGQPGYGTQPGVGAQTGAGQPGYGAQPGVGAQTGAGQ----PGY 400
Query: 347 TESHRIGG-TGIVAHVLQQEP-----SDSRNQGSGSRPSLRAFE-CREPGSGSRPSPRA- 502
IGG TG +P + +R G GS+P + A +PG G++P A
Sbjct: 401 GSQPGIGGQTGAGQPGYGSQPGIGGQTGARQPGYGSQPGVGAQTGAGQPGYGAQPGVGAQ 460
Query: 503 CGFGEPGFGSRP 538
G G+PG+GS+P
Sbjct: 461 TGAGQPGYGSQP 472
Score = 33.5 bits (75), Expect = 1.7
Identities = 35/138 (25%), Positives = 54/138 (38%), Gaps = 2/138 (1%)
Frame = +2
Query: 131 GSGPRPSLRAFE-LGEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKS 307
G G +P + A G+PG G+ P + G GS+P I G+ G+ +
Sbjct: 365 GYGTQPGVGAQTGAGQPGYGAQPGVGAQTGAGQPGYGSQPG----IGGQTGAGQPGYGSQ 420
Query: 308 LRSRGTRIWLTSFTESHRIGGTGIVAHVLQQEPSDSRNQGSGSRPSLRAFECREPGSGSR 487
G T + G+ A +P G G++ +PG GS+
Sbjct: 421 PGIGGQ----TGARQPGYGSQPGVGAQTGAGQPGYGAQPGVGAQTG-----AGQPGYGSQ 471
Query: 488 PSPRA-CGFGEPGFGSRP 538
P G G+PG+GS+P
Sbjct: 472 PGIGGQTGAGQPGYGSQP 489
Score = 33.1 bits (74), Expect(2) = 0.006
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFGEPWIVAHVLHQEPSYSGNQDRGSRPSARA-FGVGEPGYGSRPSPRA-IGLGEPG 377
G G+P A +P + G G++P G G+PGYGS+P G G+PG
Sbjct: 1008 GAGQPGYGA-----QPGFGGQLGYGNQPGVGGQTGAGQPGYGSQPGVGGQTGAGQPG 1059
Score = 33.1 bits (74), Expect = 2.2
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFGEPWIVAHVLHQEPSYSGNQDRGSRPSARA-FGVGEPGYGSRPS-PRAIGLGEPG 377
G G+P A +P + G G++P G G+PGYGS+P G G+PG
Sbjct: 962 GAGQPGYGA-----QPGFGGQPGYGNQPGVGGQTGAGQPGYGSQPGIGGQTGAGQPG 1013
Score = 32.7 bits (73), Expect = 2.9
Identities = 22/58 (37%), Positives = 31/58 (52%), Gaps = 3/58 (5%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARA-FGVGEPGYGSRPSPRA-IGLGEPG 377
G+G +P I ++P Y GS+P A G G+PGYG++P A G G+PG
Sbjct: 416 GYGSQPGIGGQTGARQPGY------GSQPGVGAQTGAGQPGYGAQPGVGAQTGAGQPG 467
Score = 32.7 bits (73), Expect = 2.9
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 255 EPSYSGNQDRGSRPSARAFGVGEPGYGSRPS-PRAIGLGEPG 377
+P Y G++P GVG+PGYGS+P G G+PG
Sbjct: 159 QPGYGDQPGVGTQP-----GVGQPGYGSQPGIGGQTGAGQPG 195
Score = 32.3 bits (72), Expect = 3.8
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPSPRA-IGLGEPG 377
G+G +P + A +P Y G + G G+PGYGS+P A G G+PG
Sbjct: 450 GYGAQPGVGAQTGAGQPGYGSQPGIGGQT-----GAGQPGYGSQPGVGAQTGAGQPG 501
Score = 32.0 bits (71), Expect = 4.9
Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 2/138 (1%)
Frame = +2
Query: 131 GSGPRPSLRAFELGEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKSL 310
G G +P + G+PG GS P G GS+P I G+ G+ +
Sbjct: 167 GVGTQPGV-----GQPGYGSQPGIGGQTGAGQPGYGSQPG----IGGQTGAGQPGY---- 213
Query: 311 RSRGTRIWLTSFTESHRIGGTGIVAHVLQQEPSDSRNQGSGSRPSLRA-FECREPGSGSR 487
G++ + + T + G G A + + G GS+P + R+PG ++
Sbjct: 214 ---GSQPVVGAQTGT---GQPGYGAQPGVGTQTGAGQPGYGSQPGIGGQTGARQPGYVTQ 267
Query: 488 PSPRA-CGFGEPGFGSRP 538
P A G G+PG+G++P
Sbjct: 268 PGVGAQTGIGQPGYGAQP 285
Score = 32.0 bits (71), Expect = 4.9
Identities = 38/140 (27%), Positives = 53/140 (37%), Gaps = 4/140 (2%)
Frame = +2
Query: 131 GSGPRPSLRAFE-LGEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFI-FGEPGSWLTSFSK 304
G G +P + A G+PG GS P G GS+P A G+PG
Sbjct: 450 GYGAQPGVGAQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGVGAQTGAGQPGYGAQPGVG 509
Query: 305 SLRSRGTRIWLTSFTESHRIGG-TGIVAHVLQQEPSDSRNQGSGSRPSLRAFECREPGSG 481
+ G + IGG TG +P G+G +PG G
Sbjct: 510 AQTGAGQ----PGYGSQPGIGGQTGAGQPGYGTQPGVGAQTGTG-----------QPGYG 554
Query: 482 SRPSPRA-CGFGEPGFGSRP 538
++P G G+PG+GS+P
Sbjct: 555 AQPGVGTQTGAGQPGYGSQP 574
Score = 31.6 bits (70), Expect = 6.4
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPSPRA-IGLGEPG 377
G+G +P I+ +P Y G + G G+PGYG++P A G G+PG
Sbjct: 280 GYGAQPGILGQTGAGQPGYGSQPGIGGQT-----GAGQPGYGTQPGVGAQTGTGQPG 331
Score = 31.6 bits (70), Expect = 6.4
Identities = 35/138 (25%), Positives = 54/138 (38%), Gaps = 2/138 (1%)
Frame = +2
Query: 131 GSGPRPSLRAFE-LGEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKS 307
G G +P + A G+PG G+ P + G GS+P I G+ G+ +
Sbjct: 314 GYGTQPGVGAQTGTGQPGYGAQPGVGTQTGAGQPGYGSQPG----IGGQTGAGQPGY--- 366
Query: 308 LRSRGTRIWLTSFTESHRIGGTGIVAHVLQQEPSDSRNQGSGSRPSLRAFECREPGSGSR 487
GT+ G+ A +P G G++ +PG GS+
Sbjct: 367 ----GTQ--------------PGVGAQTGAGQPGYGAQPGVGAQTG-----AGQPGYGSQ 403
Query: 488 PSPRA-CGFGEPGFGSRP 538
P G G+PG+GS+P
Sbjct: 404 PGIGGQTGAGQPGYGSQP 421
Score = 31.2 bits (69), Expect = 8.4
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPSPRA-IGLGEPG 377
G+G +P + A +P Y G + G G+PGYG++P A G G+PG
Sbjct: 501 GYGAQPGVGAQTGAGQPGYGSQPGIGGQT-----GAGQPGYGTQPGVGAQTGTGQPG 552
Score = 30.8 bits (68), Expect(2) = 0.033
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPS-PRAIGLGEPG 377
G+G +P I +P Y G + G G+PGYGS+P G G+PG
Sbjct: 916 GYGTQPGIGGQTAAGQPGYGSQTGVGGQ-----IGAGQPGYGSQPGIGGQTGAGQPG 967
Score = 27.7 bits (60), Expect(2) = 0.006
Identities = 15/45 (33%), Positives = 23/45 (50%)
Frame = +2
Query: 404 PSDSRNQGSGSRPSLRAFECREPGSGSRPSPRACGFGEPGFGSRP 538
P QG+G + + +PG G++P G G+PG+GS P
Sbjct: 1093 PVYGTQQGTGGQSGISG---GQPGYGTQPGQT--GAGQPGYGSLP 1132
Score = 27.3 bits (59), Expect(2) = 0.033
Identities = 14/39 (35%), Positives = 22/39 (55%), Gaps = 1/39 (2%)
Frame = +2
Query: 425 GSGSRPSLRAFECREPGSGSRPSPRA-CGFGEPGFGSRP 538
G G++P +PG G++P G G+PG+GS+P
Sbjct: 967 GYGAQPGFGG----QPGYGNQPGVGGQTGAGQPGYGSQP 1001
Score = 27.3 bits (59), Expect(2) = 1.4
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFGEPWIVAHVLHQEPSYSGNQDRGSRPSARA-FGVGEPGYGSRPS-PRAIGLGEPG 377
G G+P A + +G G++P G G+PGYGS+P G G+PG
Sbjct: 638 GTGQPGYGAQPGVGGQTGAGQPGYGTQPGIGGQTGAGQPGYGSQPGIGGQTGGGQPG 694
Score = 25.0 bits (53), Expect(2) = 1.4
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 467 EPGSGSRPSPRAC-GFGEPGFGSRP 538
+P GS+P A G G+PG+G++P
Sbjct: 707 QPSYGSQPGVGAQNGAGQPGYGTQP 731
>gb|AAF13280.1| pericardine [Drosophila melanogaster]
Length = 1729
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFGEPWIVAHVLHQEPSYSGNQDRGSRPSARA-FGVGEPGYGSRPSPRA-IGLGEPG 377
G G+P A +P + G G++P G G+PGYGS+P G G+PG
Sbjct: 1041 GAGQPGYGA-----QPGFGGQPGYGNQPGVGGQTGAGQPGYGSQPGVGGQTGAGQPG 1092
Score = 33.1 bits (74), Expect = 2.2
Identities = 35/126 (27%), Positives = 48/126 (37%), Gaps = 3/126 (2%)
Frame = +2
Query: 170 GEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKSLRSRG-TRIWLTSF 346
G+PG GS P G GS+P I G+ G+ + G T +
Sbjct: 226 GQPGYGSQPGIGGQTGAGQPGYGSQPG----IGGQTGAGQPGYGSQPGIGGQTGAGQPGY 281
Query: 347 TESHRIGG-TGIVAHVLQQEPSDSRNQGSGSRPSLRAFECREPGSGSRPSPRA-CGFGEP 520
IGG TG +P G+G +PG GS+P G G+P
Sbjct: 282 GSQPGIGGQTGAGQPGYGTQPGIGGQTGAG-----------QPGYGSQPGIGGQTGAGQP 330
Query: 521 GFGSRP 538
G+GS+P
Sbjct: 331 GYGSQP 336
Score = 33.1 bits (74), Expect = 2.2
Identities = 40/146 (27%), Positives = 59/146 (40%), Gaps = 10/146 (6%)
Frame = +2
Query: 131 GSGPRPSLRAFE-LGEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKS 307
G G +P + A G+PG GS P G GS+P I G+ G+ +
Sbjct: 484 GYGSQPGIGAQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPG----IGGQTGAGQPGYGTQ 539
Query: 308 LR-SRGTRIWLTSFTESHRIGG-TGIVAHVLQQEP-----SDSRNQGSGSRPSLRAFE-C 463
T + IGG TG +P + + G G++P + A
Sbjct: 540 PGIGAQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGTQPGVGAQTGT 599
Query: 464 REPGSGSRPSPRA-CGFGEPGFGSRP 538
+PG GS+P G G+PG+GS+P
Sbjct: 600 GQPGYGSQPGVGTQIGAGQPGYGSQP 625
Score = 33.1 bits (74), Expect = 2.2
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 3/139 (2%)
Frame = +2
Query: 131 GSGPRPSLRAFE-LGEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKS 307
G G +P + A G+PG GS P G GS+P I G+ G+ +
Sbjct: 535 GYGTQPGIGAQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPG----IGGQTGAGQPGY--- 587
Query: 308 LRSRGTRIWLTSFTESHRIGGTGIVAHVLQQEPSDSRNQGSGSRPSLRA-FECREPGSGS 484
GT+ + + T GTG G GS+P + +PG GS
Sbjct: 588 ----GTQPGVGAQT------GTG--------------QPGYGSQPGVGTQIGAGQPGYGS 623
Query: 485 RPSPRA-CGFGEPGFGSRP 538
+P G G+PG+GS+P
Sbjct: 624 QPGIGGQTGAGQPGYGSQP 642
Score = 32.3 bits (72), Expect = 3.8
Identities = 37/128 (28%), Positives = 57/128 (43%), Gaps = 5/128 (3%)
Frame = +2
Query: 170 GEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKSLRSRGTRIWLTSFT 349
G+PG GS P + G GS+P I G+ G+ + G++ + T
Sbjct: 481 GQPGYGSQPGIGAQTGAGQPGYGSQPG----IGGQTGAGQPGY-------GSQPGIGGQT 529
Query: 350 ESHRIG-GT--GIVAHVLQQEPSDSRNQGSGSRPSLRA-FECREPGSGSRPS-PRACGFG 514
+ + G GT GI A +P G GS+P + +PG GS+P G G
Sbjct: 530 GAGQPGYGTQPGIGAQTGAGQP------GYGSQPGIGGQTGAGQPGYGSQPGIGGQTGAG 583
Query: 515 EPGFGSRP 538
+PG+G++P
Sbjct: 584 QPGYGTQP 591
Score = 32.3 bits (72), Expect = 3.8
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = +3
Query: 267 SGNQDRGSRPSARA-FGVGEPGYGSRPS-PRAIGLGEPG 377
+G G++P A G G+PGYGS+P IG G+PG
Sbjct: 582 AGQPGYGTQPGVGAQTGTGQPGYGSQPGVGTQIGAGQPG 620
Score = 32.0 bits (71), Expect = 4.9
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 4/127 (3%)
Frame = +2
Query: 170 GEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKSLRSRGTRIWLTSFT 349
G+PG G+ P G GS+P I G+ G+ + GT+ + T
Sbjct: 379 GQPGYGTQPGIGGQTGPGQPGYGSQPG----IGGQTGAGQPGY-------GTQPGIGGQT 427
Query: 350 ESHRIG-GT--GIVAHVLQQEPSDSRNQGSGSRPSLRAFECREPGSGSRPSPRA-CGFGE 517
+ + G GT GI A +P G G + +PG G++P G G+
Sbjct: 428 GAGQPGYGTQPGIGAQTGAGQPGYGTQPGIGGQTG-----AGQPGYGTQPGIGVQTGAGQ 482
Query: 518 PGFGSRP 538
PG+GS+P
Sbjct: 483 PGYGSQP 489
Score = 31.2 bits (69), Expect = 8.4
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPSPRA-IGLGEPG 377
G+G +P I +P Y G++ G G+PGYG++P A G G+PG
Sbjct: 144 GYGSQPGIGGQTATGQPGYGSQLGVGAQA-----GAGQPGYGAQPGVGAQTGAGQPG 195
Score = 31.2 bits (69), Expect = 8.4
Identities = 35/132 (26%), Positives = 53/132 (39%), Gaps = 9/132 (6%)
Frame = +2
Query: 170 GEPGSGSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKSLRSRG-TRIWLTSF 346
G+PG GS P G GS+P I G+ G+ + G T +
Sbjct: 243 GQPGYGSQPGIGGQTGAGQPGYGSQPG----IGGQTGAGQPGYGSQPGIGGQTGAGQPGY 298
Query: 347 TESHRIGG-TGIVAHVLQQEP-----SDSRNQGSGSRPSLRAFE-CREPGSGSRPSPRA- 502
IGG TG +P + + G GS+P + +PG G++P
Sbjct: 299 GTQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGSQPGIGGQTGAGQPGYGTQPGIGGQ 358
Query: 503 CGFGEPGFGSRP 538
G G+PG+G++P
Sbjct: 359 TGAGQPGYGTQP 370
Score = 28.5 bits (62), Expect(2) = 0.32
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Frame = +3
Query: 201 QVAFGF-GEPWIVAHV--LHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPS-PRAIGLG 368
Q +GF G+P I ++P Y G + +A G+PGYGS+P G G
Sbjct: 955 QPGYGFIGQPGIGGQTGTSGRQPGYGTQPGIGGQTAA-----GQPGYGSQPGIGGQTGAG 1009
Query: 369 EPG 377
+PG
Sbjct: 1010 QPG 1012
Score = 27.7 bits (60), Expect(2) = 0.53
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 213 GFG-EPWIVAHVLHQEPSYSGNQDRGSRPSARAFGVGEPGYGSRPS-PRAIGLGEPG 377
G+G +P + +P Y G + G G+PGYGS+P G G+PG
Sbjct: 705 GYGTQPGVGTQTGTGQPGYGAQPGIGGQS-----GAGQPGYGSQPGIGGQTGGGQPG 756
Score = 26.2 bits (56), Expect(2) = 0.53
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 467 EPGSGSRPSPRAC-GFGEPGFGSRP 538
+P GS+P A G G+PG+G+RP
Sbjct: 769 QPSYGSQPGVGAQNGGGQPGYGTRP 793
Score = 26.2 bits (56), Expect(2) = 0.32
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = +2
Query: 467 EPGSGSRPSPRA-CGFGEPGFGSRP 538
+PG GS+P G G+PG+G++P
Sbjct: 1027 QPGYGSQPGIGGQTGAGQPGYGAQP 1051
>gb|ZP_00059112.1| hypothetical protein [Thermobifida fusca]
Length = 982
Score = 31.2 bits (69), Expect(2) = 0.33
Identities = 30/92 (32%), Positives = 36/92 (38%), Gaps = 5/92 (5%)
Frame = +3
Query: 279 DRGSRPSARAFGVGEPGYGSRPSPRAIGLGEPGSWLTSFNKSLRIR--GTRDLAHVLHLE 452
DR +RP R GV P PR G G G T ++ R R G L
Sbjct: 87 DRAARPHPRPRGVPAAAGSGGPLPRQHGRGGRGG--TGLRRAGRTRRPGQDATRSGLRPG 144
Query: 453 PSNAENQDLAHVPHQ---EPADSGNQDLAHVP 539
P N + A +P Q PAD Q L H+P
Sbjct: 145 PGNRLPRPGAPLPRQRLHRPADPVRQRLPHLP 176
Score = 23.5 bits (49), Expect(2) = 0.33
Identities = 11/29 (37%), Positives = 13/29 (43%)
Frame = +2
Query: 170 GEPGSGSHPSPSSLRIRGTVDRGSRPSPR 256
G PG S +R DR +RP PR
Sbjct: 67 GRPGGRGDRPASHVRAARLPDRAARPHPR 95
>gb|ZP_00048906.1| hypothetical protein [Magnetospirillum magnetotacticum]
Length = 301
Score = 35.8 bits (81), Expect = 0.34
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 8/82 (9%)
Frame = +2
Query: 185 GSHPSPSSLRIRGTVDRGSRPSPRAFIFGEPGSWLTSFSKSLRSR--------GTRIWLT 340
GS P+P++ R G SRP P G PG W F ++ S G R W T
Sbjct: 5 GSRPAPAAARRYGRPATASRPRPPRRPGGRPGHWPRWFRRARESAWDGARKAPGRRSW-T 63
Query: 341 SFTESHRIGGTGIVAHVLQQEP 406
S S G G A VL+ P
Sbjct: 64 SVHLSRPTPGQGKFAKVLKVRP 85
>ref|NP_644814.1| GAS2-related protein [Homo sapiens]
gi|21070344|gb|AAM34265.1|AF508785_1 GAS2-related
protein isoform beta [Homo sapiens]
Length = 880
Score = 34.7 bits (78), Expect = 0.76
Identities = 27/80 (33%), Positives = 34/80 (41%), Gaps = 6/80 (7%)
Frame = -1
Query: 430 RSLVPRIRRLLLKDVSHDPGSPNPMALGEGREPYPGSPT------PKALAEGREPRSWFP 269
RSL+P R+ D P SP + +GR+P S P L GR P SW
Sbjct: 366 RSLIPSWRQPTAGD---SPPSPQSSSTQKGRDPQCTSSGKREERYPPELPRGRIPTSWVH 422
Query: 268 EYEGSW*RT*ATIHGSPNPK 209
E SW T G+P P+
Sbjct: 423 EETDSW----GTDAGNPTPQ 438
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,746,899
Number of Sequences: 1393205
Number of extensions: 15312974
Number of successful extensions: 50169
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 39793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49620
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
