Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005157A_C01 KMC005157A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA83471.1| Csf-3 [Cucumis sativus] 194 6e-49
sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 gi|481228|pir||S383... 190 1e-47
gb|AAK29057.1|AF346004_1 L3 ribosomal protein [Lolium perenne] 187 6e-47
ref|NP_176352.1| ribosomal protein; protein id: At1g61580.1 [Ara... 177 8e-44
pir||JQ0772 ribosomal protein L3.e (clone ARP2), cytosolic - Ara... 177 8e-44
>dbj|BAA83471.1| Csf-3 [Cucumis sativus]
Length = 219
Score = 194 bits (493), Expect = 6e-49
Identities = 91/104 (87%), Positives = 100/104 (95%)
Frame = -1
Query: 554 YKVGKTGEESHTAITEFDRTEKDITPMAGFPHYGVVNHDYILVKGCCVGPKKRVITLRQS 375
YK+GKTG+ESHTAITEFDRTEKDITPM GFPHYG+V DY+++KG CVGPKKRVITLRQS
Sbjct: 116 YKIGKTGQESHTAITEFDRTEKDITPMGGFPHYGIVKSDYLMIKGGCVGPKKRVITLRQS 175
Query: 374 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTSQEKQKFYGRLKA 243
LLKQTSR+ALEEIKLKFIDTSSKFGHGRFQT+QEKQKF+GRLKA
Sbjct: 176 LLKQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFFGRLKA 219
>sp|P35684|RL3_ORYSA 60S RIBOSOMAL PROTEIN L3 gi|481228|pir||S38359 ribosomal protein
L3.e, cytosolic - rice gi|303853|dbj|BAA02155.1|
ribosomal protein L3 [Oryza sativa (japonica
cultivar-group)]
Length = 389
Score = 190 bits (482), Expect = 1e-47
Identities = 87/104 (83%), Positives = 98/104 (93%)
Frame = -1
Query: 554 YKVGKTGEESHTAITEFDRTEKDITPMAGFPHYGVVNHDYILVKGCCVGPKKRVITLRQS 375
YK+GK+G+ESH A TEFDRTEKDITPM GFPHYGVV DY+++KGCCVGPKKRV+TLRQS
Sbjct: 286 YKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQS 345
Query: 374 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTSQEKQKFYGRLKA 243
LLKQTSRLALEEIKLKFIDTSSKFGHGRFQT+ EKQ+F+G+LKA
Sbjct: 346 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389
>gb|AAK29057.1|AF346004_1 L3 ribosomal protein [Lolium perenne]
Length = 220
Score = 187 bits (476), Expect = 6e-47
Identities = 86/104 (82%), Positives = 96/104 (91%)
Frame = -1
Query: 554 YKVGKTGEESHTAITEFDRTEKDITPMAGFPHYGVVNHDYILVKGCCVGPKKRVITLRQS 375
YK+GK G+E+H A TEFDRTEKDITPM GFPHYGVV DY+++KGCCVGPKKRV+TLRQS
Sbjct: 117 YKIGKVGQETHDASTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQS 176
Query: 374 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTSQEKQKFYGRLKA 243
LLKQTSRLALEEIKLKF+D SSKFGHGRFQT+ EKQKFYG+LKA
Sbjct: 177 LLKQTSRLALEEIKLKFVDPSSKFGHGRFQTTDEKQKFYGKLKA 220
>ref|NP_176352.1| ribosomal protein; protein id: At1g61580.1 [Arabidopsis thaliana]
gi|21542436|sp|P22738|RL3B_ARATH 60S ribosomal protein
L3 gi|25295006|pir||B96641 60s ribosomal protein L3
[imported] - Arabidopsis thaliana
gi|4585874|gb|AAD25547.1|AC005850_4 60s ribosomal
protein L3 [Arabidopsis thaliana]
gi|28392966|gb|AAO41918.1| putative ribosomal protein
[Arabidopsis thaliana] gi|28973595|gb|AAO64122.1|
putative ribosomal protein [Arabidopsis thaliana]
Length = 390
Score = 177 bits (449), Expect = 8e-44
Identities = 79/101 (78%), Positives = 93/101 (91%)
Frame = -1
Query: 554 YKVGKTGEESHTAITEFDRTEKDITPMAGFPHYGVVNHDYILVKGCCVGPKKRVITLRQS 375
Y+VGK G+E+H+A+TE+DRTEKDITPM GFPHYG+V DY+++KGCCVGPKKRV+TLRQ+
Sbjct: 286 YRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQT 345
Query: 374 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTSQEKQKFYGR 252
LLKQTSRLA+EEIKLKFID +S GHGRFQTSQEK KFYGR
Sbjct: 346 LLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386
>pir||JQ0772 ribosomal protein L3.e (clone ARP2), cytosolic - Arabidopsis
thaliana gi|806279|gb|AAA66161.1| ribosomal protein
Length = 390
Score = 177 bits (449), Expect = 8e-44
Identities = 79/101 (78%), Positives = 93/101 (91%)
Frame = -1
Query: 554 YKVGKTGEESHTAITEFDRTEKDITPMAGFPHYGVVNHDYILVKGCCVGPKKRVITLRQS 375
Y+VGK G+E+H+A+TE+DRTEKDITPM GFPHYG+V DY+++KGCCVGPKKRV+TLRQ+
Sbjct: 286 YRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQT 345
Query: 374 LLKQTSRLALEEIKLKFIDTSSKFGHGRFQTSQEKQKFYGR 252
LLKQTSRLA+EEIKLKFID +S GHGRFQTSQEK KFYGR
Sbjct: 346 LLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,332,912
Number of Sequences: 1393205
Number of extensions: 9934430
Number of successful extensions: 25834
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 24891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25742
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
