Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005155A_C01 KMC005155A_c01
(738 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199968.1| putative protein; protein id: At5g51550.1, supp... 328 6e-89
gb|AAL24269.1| AT5g51550/K17N15_10 [Arabidopsis thaliana] gi|216... 328 6e-89
gb|AAM64823.1| unknown [Arabidopsis thaliana] 326 2e-88
dbj|BAB19386.1| contains ESTs C27834(C53187),AU161017(C53187)~un... 268 8e-71
ref|NP_565409.1| expressed protein; protein id: At2g17230.1, sup... 253 3e-66
>ref|NP_199968.1| putative protein; protein id: At5g51550.1, supported by cDNA:
33455., supported by cDNA: gi_16226761, supported by
cDNA: gi_16604526 [Arabidopsis thaliana]
gi|9758197|dbj|BAB08671.1|
gb|AAD25141.1~gene_id:K17N15.10~similar to unknown
protein [Arabidopsis thaliana]
gi|16226762|gb|AAL16255.1|AF428325_1 AT5g51550/K17N15_10
[Arabidopsis thaliana]
Length = 337
Score = 328 bits (840), Expect = 6e-89
Identities = 147/176 (83%), Positives = 161/176 (90%)
Frame = -1
Query: 738 PINPKSGLYLLLTADDVFVQDFCTSVCGFHYFTFPSLVGYTLPYAWVGNSAKLCPGQCAY 559
P+NPKSGLYLLLTADDV+VQDFC VCGFHYFTFPS+VG+TLPYAWVGNSAKLCPG CAY
Sbjct: 162 PVNPKSGLYLLLTADDVYVQDFCGQVCGFHYFTFPSIVGFTLPYAWVGNSAKLCPGVCAY 221
Query: 558 PFAVPAFIPNRKPFKSPNGDVGVDGMISVIGHEIAELATNPLANAWYAGQDPTFPVEIAD 379
PFAVPAFIP KP KSPNGDVGVDGMISVI HEIAELATNPL NAWYAG DP PVEIAD
Sbjct: 222 PFAVPAFIPGLKPVKSPNGDVGVDGMISVIAHEIAELATNPLVNAWYAGPDPVAPVEIAD 281
Query: 378 LCEGIYGTGGGGSYTGQVLDGGDGATFNMKGIRRRFLVQWVWSHVLNFCTGPNALD 211
LCEGIYGTGGGGSYTGQ+L+ GAT+N+ GIRRR+L+QW+WSHV+++CTGPNALD
Sbjct: 282 LCEGIYGTGGGGSYTGQMLNDHSGATYNVNGIRRRYLIQWLWSHVVSYCTGPNALD 337
>gb|AAL24269.1| AT5g51550/K17N15_10 [Arabidopsis thaliana]
gi|21655293|gb|AAM65358.1| AT5g51550/K17N15_10
[Arabidopsis thaliana]
Length = 337
Score = 328 bits (840), Expect = 6e-89
Identities = 147/176 (83%), Positives = 161/176 (90%)
Frame = -1
Query: 738 PINPKSGLYLLLTADDVFVQDFCTSVCGFHYFTFPSLVGYTLPYAWVGNSAKLCPGQCAY 559
P+NPKSGLYLLLTADDV+VQDFC VCGFHYFTFPS+VG+TLPYAWVGNSAKLCPG CAY
Sbjct: 162 PVNPKSGLYLLLTADDVYVQDFCGQVCGFHYFTFPSIVGFTLPYAWVGNSAKLCPGVCAY 221
Query: 558 PFAVPAFIPNRKPFKSPNGDVGVDGMISVIGHEIAELATNPLANAWYAGQDPTFPVEIAD 379
PFAVPAFIP KP KSPNGDVGVDGMISVI HEIAELATNPL NAWYAG DP PVEIAD
Sbjct: 222 PFAVPAFIPGLKPVKSPNGDVGVDGMISVIAHEIAELATNPLVNAWYAGPDPVAPVEIAD 281
Query: 378 LCEGIYGTGGGGSYTGQVLDGGDGATFNMKGIRRRFLVQWVWSHVLNFCTGPNALD 211
LCEGIYGTGGGGSYTGQ+L+ GAT+N+ GIRRR+L+QW+WSHV+++CTGPNALD
Sbjct: 282 LCEGIYGTGGGGSYTGQMLNDHSGATYNVNGIRRRYLIQWLWSHVVSYCTGPNALD 337
>gb|AAM64823.1| unknown [Arabidopsis thaliana]
Length = 337
Score = 326 bits (836), Expect = 2e-88
Identities = 146/176 (82%), Positives = 160/176 (89%)
Frame = -1
Query: 738 PINPKSGLYLLLTADDVFVQDFCTSVCGFHYFTFPSLVGYTLPYAWVGNSAKLCPGQCAY 559
P+NPKSGLYLLLTADDV+VQDFC VCGFHYFTFPS+VG+TLPYAWVGNSAKLCPG CAY
Sbjct: 162 PVNPKSGLYLLLTADDVYVQDFCGQVCGFHYFTFPSIVGFTLPYAWVGNSAKLCPGVCAY 221
Query: 558 PFAVPAFIPNRKPFKSPNGDVGVDGMISVIGHEIAELATNPLANAWYAGQDPTFPVEIAD 379
PF VPAFIP KP KSPNGDVGVDGMISVI HEIAELATNPL NAWYAG DP PVEIAD
Sbjct: 222 PFXVPAFIPGLKPVKSPNGDVGVDGMISVIAHEIAELATNPLVNAWYAGPDPVAPVEIAD 281
Query: 378 LCEGIYGTGGGGSYTGQVLDGGDGATFNMKGIRRRFLVQWVWSHVLNFCTGPNALD 211
LCEGIYGTGGGGSYTGQ+L+ GAT+N+ GIRRR+L+QW+WSHV+++CTGPNALD
Sbjct: 282 LCEGIYGTGGGGSYTGQMLNDHSGATYNVNGIRRRYLIQWLWSHVVSYCTGPNALD 337
>dbj|BAB19386.1| contains ESTs C27834(C53187),AU161017(C53187)~unknown protein
[Oryza sativa (japonica cultivar-group)]
gi|28190675|gb|AAO33153.1| unknown [Oryza sativa
(japonica cultivar-group)]
Length = 348
Score = 268 bits (684), Expect = 8e-71
Identities = 121/174 (69%), Positives = 150/174 (85%), Gaps = 3/174 (1%)
Frame = -1
Query: 723 SGLYLLLTADDVFVQDFCTSVCGFHYFTFPSLVGYTLPYAWVGNSAKLCPGQCAYPFAVP 544
SG+YL+LT+ +V V++FC VCGFHYFTFPS+VGYTLPYAWVGNSA CP CAYPFA+P
Sbjct: 174 SGVYLVLTSPEVVVENFCGQVCGFHYFTFPSVVGYTLPYAWVGNSAARCPEVCAYPFAIP 233
Query: 543 AFIPN-RKPFKSPNGDVGVDGMISVIGHEIAELATNPLANAWYAGQDPTFPVEIADLCEG 367
+++ R+ PNGDVGVDGM+SVI HE+AELA+NPLANAWYAG+DP+FP EIADLCEG
Sbjct: 234 SYVGGGRRAEAPPNGDVGVDGMVSVIAHELAELASNPLANAWYAGEDPSFPTEIADLCEG 293
Query: 366 IYGTGGGGSYTGQVL-DGGDGATFNMKGI-RRRFLVQWVWSHVLNFCTGPNALD 211
IYGTGGGG+YTGQ+L DG GA++N+ G+ R+FLVQWVW+ +L++C+GPNALD
Sbjct: 294 IYGTGGGGAYTGQLLTDGRSGASYNVNGVGGRKFLVQWVWNPILSYCSGPNALD 347
>ref|NP_565409.1| expressed protein; protein id: At2g17230.1, supported by cDNA:
641., supported by cDNA: gi_16604329, supported by cDNA:
gi_19699195 [Arabidopsis thaliana]
gi|25371899|pir||F84549 hypothetical protein At2g17230
[imported] - Arabidopsis thaliana
gi|4584346|gb|AAD25141.1| expressed protein [Arabidopsis
thaliana] gi|16604330|gb|AAL24171.1| At2g17230/T23A1.9
[Arabidopsis thaliana] gi|19699196|gb|AAL90964.1|
At2g17230/T23A1.9 [Arabidopsis thaliana]
Length = 363
Score = 253 bits (645), Expect = 3e-66
Identities = 111/179 (62%), Positives = 142/179 (79%), Gaps = 3/179 (1%)
Frame = -1
Query: 738 PINPKSGLYLLLTADDVFVQDFCTSVCGFHYFTFPSLVGYTLPYAWVGNSAKLCPGQCAY 559
P++ K+G+YL+LT+ DV +QDFC +VCGFHYFTFPS+VGYT+PYAWVG S K CP CAY
Sbjct: 185 PVDHKNGMYLVLTSHDVTMQDFCRAVCGFHYFTFPSMVGYTMPYAWVGQSGKQCPEVCAY 244
Query: 558 PFAVPAFIPNRKP--FKSPNGDVGVDGMISVIGHEIAELATNPLANAWYAGQDPTFPVEI 385
PFA+P ++ + P + PNG+ GVDGM+SVIGHE+AE+ +NPL NAWYAG+DPT P EI
Sbjct: 245 PFALPGYMGHGGPGELRPPNGETGVDGMVSVIGHELAEVVSNPLINAWYAGEDPTAPTEI 304
Query: 384 ADLCEGIYGTGGGGSYTGQVLDGGDGATFNMKGI-RRRFLVQWVWSHVLNFCTGPNALD 211
DLCEG+YG+GGGG Y GQV+ +G TFNM G R+FLVQW+W+ L C+GPN++D
Sbjct: 305 GDLCEGLYGSGGGGGYIGQVMRDREGKTFNMNGKGGRKFLVQWIWNPNLKACSGPNSVD 363
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 729,778,288
Number of Sequences: 1393205
Number of extensions: 19471440
Number of successful extensions: 95226
Number of sequences better than 10.0: 309
Number of HSP's better than 10.0 without gapping: 73073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92038
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
