Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005154A_C01 KMC005154A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_344406.1| Hypothetical protein [Sulfolobus solfataricus] ... 34 1.2
ref|NP_048091.1| ORF MSV020 hypothetical protein [Melanoplus san... 32 5.7
gb|EAA21432.1| hypothetical protein [Plasmodium yoelii yoelii] 31 7.5
ref|NP_764472.1| conserved hypothetical protein [Staphylococcus ... 31 7.5
gb|EAA21515.1| hypothetical protein [Plasmodium yoelii yoelii] 31 9.8
>ref|NP_344406.1| Hypothetical protein [Sulfolobus solfataricus]
gi|25375981|pir||E90492 hypothetical protein SSO3090
[imported] - Sulfolobus solfataricus
gi|13816510|gb|AAK43196.1| Hypothetical protein
[Sulfolobus solfataricus]
Length = 321
Score = 33.9 bits (76), Expect = 1.2
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Frame = -1
Query: 414 SSLSESNQAYYLLPLAVFLVIYK*IICNCI-----WKHEAQKL-----DYSWLALSE*LL 265
S LS++ Q ++LP +F VIY + C+ I ++H+ K D++ L + + LL
Sbjct: 53 SPLSDTGQQTFILPFLIFTVIY--LACSSIFGYFLYRHKENKFILVKGDFTVLNIMKSLL 110
Query: 264 NDPCACQNQFIKILLFKHVT 205
ND F KIL+F V+
Sbjct: 111 ND-----KAFRKILIFYSVS 125
>ref|NP_048091.1| ORF MSV020 hypothetical protein [Melanoplus sanguinipes
entomopoxvirus] gi|11289298|pir||T28181 hypothetical
protein ORF20 - Melanoplus sanguinipes entomopoxvirus
(isolate Tuscon) gi|4049653|gb|AAC97613.1| ORF MSV020
hypothetical protein [Melanoplus sanguinipes
entomopoxvirus]
Length = 175
Score = 31.6 bits (70), Expect = 5.7
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Frame = +1
Query: 169 KRKIQISYNFYWSYMFK*KNLNELVL------TGTWVIEKLFRQRKPTIVKLLSFMLPYA 330
K + + +NF Y++K N+ EL L T E + + TI+KLL + + Y
Sbjct: 37 KHQFKELFNFMQKYIYKIHNIKELYLFNDCIDTSNIKCEYIDYKHITTIIKLLEYPINYK 96
Query: 331 IAYYSFIYYQKNSK 372
Y FI + SK
Sbjct: 97 SLEYYFIKNENFSK 110
>gb|EAA21432.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 1013
Score = 31.2 bits (69), Expect = 7.5
Identities = 15/39 (38%), Positives = 22/39 (55%)
Frame = -2
Query: 338 YAIAYGSMKLKSLTIVGLRCRNNFSMTHVPVRTSSLRFF 222
+ + YG + K +VGL NNF + P+ + SLRFF
Sbjct: 7 FNVCYGEEEEKK-NVVGLLVENNFDEVYEPLTSESLRFF 44
>ref|NP_764472.1| conserved hypothetical protein [Staphylococcus epidermidis ATCC
12228] gi|27315380|gb|AAO04514.1|AE016747_11 conserved
hypothetical protein [Staphylococcus epidermidis ATCC
12228]
Length = 867
Score = 31.2 bits (69), Expect = 7.5
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 133 PQLLFPSFYLRRKRKIQISYNFYWSYMFK*KNLNELVLTGTWVIEKLFRQRKPTIVKLLS 312
P +F + L + YNF WS+ NL ++ W IE+ F++RK +
Sbjct: 148 PAPMFIATILYGMSTVVTYYNFTWSFY---GNLLIMLPMSLWAIERFFKERK---IGWFI 201
Query: 313 FMLPYAI-AYYSFIYYQ 360
F + Y + + + F YY+
Sbjct: 202 FAIAYTLFSNFYFSYYE 218
>gb|EAA21515.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 668
Score = 30.8 bits (68), Expect = 9.8
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +1
Query: 70 LK*ITKIYPRLIIH*AGLAGHPQLLFPSFYLRRKRKIQISYNFYWSYMFK 219
LK + KIYPR+ + P+LL+ +L + IS+ Y+SY F+
Sbjct: 528 LKKLIKIYPRIFTYNIYRTIRPKLLYLIRHLNKSFTDSISFPQYYSYSFR 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,760,522
Number of Sequences: 1393205
Number of extensions: 9165659
Number of successful extensions: 15898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15895
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
