Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005151A_C01 KMC005151A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF69545.1|AC008007_20 F12M16.22 [Arabidopsis thaliana] 193 1e-48
ref|NP_564627.1| F-box containing tubby family protein; protein ... 193 1e-48
dbj|BAB93319.1| putative tubby-like protein [Oryza sativa (japon... 171 5e-42
dbj|BAB61197.1| putative Tub family protein [Oryza sativa (japon... 154 1e-36
emb|CAB88665.1| tubby-like protein [Cicer arietinum] 150 1e-35
>gb|AAF69545.1|AC008007_20 F12M16.22 [Arabidopsis thaliana]
Length = 579
Score = 193 bits (491), Expect = 1e-48
Identities = 99/132 (75%), Positives = 105/132 (79%), Gaps = 9/132 (6%)
Frame = -1
Query: 570 SLKCPV-----SSAGESPDSMSPDGNKMHSQVH----GYTILKNKAPRWHEHLQCWCLNF 418
+L+CP SSAG S D D K+ + + TILKNKAPRWHEHLQCWCLNF
Sbjct: 448 TLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSLTILKNKAPRWHEHLQCWCLNF 507
Query: 417 HGRVTVASVKNFQLVATVDPTPPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAI 238
HGRVTVASVKNFQLVATVD + P GKGDEETVLLQFGKVGDD FTMDYRQPLSAFQAFAI
Sbjct: 508 HGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAI 567
Query: 237 CLTSFGTKLACE 202
CLTSFGTKLACE
Sbjct: 568 CLTSFGTKLACE 579
>ref|NP_564627.1| F-box containing tubby family protein; protein id: At1g53320.1,
supported by cDNA: gi_13877766, supported by cDNA:
gi_16323399 [Arabidopsis thaliana]
gi|13877767|gb|AAK43961.1|AF370146_1 unknown protein
[Arabidopsis thaliana] gi|16323400|gb|AAL15194.1|
unknown protein [Arabidopsis thaliana]
Length = 379
Score = 193 bits (491), Expect = 1e-48
Identities = 99/132 (75%), Positives = 105/132 (79%), Gaps = 9/132 (6%)
Frame = -1
Query: 570 SLKCPV-----SSAGESPDSMSPDGNKMHSQVH----GYTILKNKAPRWHEHLQCWCLNF 418
+L+CP SSAG S D D K+ + + TILKNKAPRWHEHLQCWCLNF
Sbjct: 248 TLRCPSPSPSSSSAGLSSDQKPCDVTKIMKKPNKDGSSLTILKNKAPRWHEHLQCWCLNF 307
Query: 417 HGRVTVASVKNFQLVATVDPTPPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAI 238
HGRVTVASVKNFQLVATVD + P GKGDEETVLLQFGKVGDD FTMDYRQPLSAFQAFAI
Sbjct: 308 HGRVTVASVKNFQLVATVDQSQPSGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAI 367
Query: 237 CLTSFGTKLACE 202
CLTSFGTKLACE
Sbjct: 368 CLTSFGTKLACE 379
>dbj|BAB93319.1| putative tubby-like protein [Oryza sativa (japonica
cultivar-group)] gi|21644629|dbj|BAC01188.1| putative
tubby-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 374
Score = 171 bits (434), Expect = 5e-42
Identities = 80/95 (84%), Positives = 84/95 (88%)
Frame = -1
Query: 486 GYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDPTPPGGKGDEETVLLQFG 307
G T+L+NKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVA DP P DEETVLLQFG
Sbjct: 280 GNTVLRNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVAAADPNDPASSKDEETVLLQFG 339
Query: 306 KVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 202
KV D+IFTMDYRQPLSAFQAFAI L+SFGTKLACE
Sbjct: 340 KVDDNIFTMDYRQPLSAFQAFAISLSSFGTKLACE 374
>dbj|BAB61197.1| putative Tub family protein [Oryza sativa (japonica
cultivar-group)] gi|20161308|dbj|BAB90233.1| putative
Tub family protein [Oryza sativa (japonica
cultivar-group)]
Length = 368
Score = 154 bits (388), Expect = 1e-36
Identities = 74/121 (61%), Positives = 93/121 (76%)
Frame = -1
Query: 570 SLKCPVSSAGESPDSMSPDGNKMHSQVHGYTILKNKAPRWHEHLQCWCLNFHGRVTVASV 391
S++CPV G + D DG ++ + + +L +K P WHEHLQCWCLNFHGRV VASV
Sbjct: 255 SVQCPVLK-GTAVDPQ--DGKRLSNSIPSSLVLNSKVPSWHEHLQCWCLNFHGRVMVASV 311
Query: 390 KNFQLVATVDPTPPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKL 211
KNFQL+A V+P G+ ++TV+LQFGK+ DD+FTMDYRQPLSAFQAFAICL++FGTKL
Sbjct: 312 KNFQLIAPVEP----GEPSDKTVVLQFGKIDDDVFTMDYRQPLSAFQAFAICLSNFGTKL 367
Query: 210 A 208
A
Sbjct: 368 A 368
>emb|CAB88665.1| tubby-like protein [Cicer arietinum]
Length = 411
Score = 150 bits (379), Expect = 1e-35
Identities = 78/119 (65%), Positives = 89/119 (74%), Gaps = 5/119 (4%)
Frame = -1
Query: 543 GESP--DSMSPDGNKMHSQVHGYT---ILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQ 379
G+SP DS S + +++ G +LKNKAPRWHE LQCWCLNF GRVTVASVKNFQ
Sbjct: 293 GKSPMTDSYSGNLSELPELSQGSVEPLVLKNKAPRWHEQLQCWCLNFVGRVTVASVKNFQ 352
Query: 378 LVATVDPTPPGGKGDEETVLLQFGKVGDDIFTMDYRQPLSAFQAFAICLTSFGTKLACE 202
LVA VDP+ ++E V+LQFGK+G DIFTMDY PLSAFQAFAICLTSF TK ACE
Sbjct: 353 LVAAVDPSHNVSSEEQERVILQFGKIGKDIFTMDYSYPLSAFQAFAICLTSFDTKPACE 411
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,857,649
Number of Sequences: 1393205
Number of extensions: 11264017
Number of successful extensions: 23459
Number of sequences better than 10.0: 88
Number of HSP's better than 10.0 without gapping: 22717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23380
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
