Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005150A_C01 KMC005150A_c01
(598 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192395.1| unknown protein; protein id: At4g04860.1, suppo... 272 2e-72
pir||B85249 hypothetical protein AT4g21810 [imported] - Arabidop... 260 8e-69
pir||T05463 hypothetical protein T8O5.20 - Arabidopsis thaliana ... 260 8e-69
gb|AAL38318.1| putative protein [Arabidopsis thaliana] gi|248997... 260 8e-69
ref|NP_193912.2| putative protein; protein id: At4g21810.1, supp... 260 8e-69
>ref|NP_192395.1| unknown protein; protein id: At4g04860.1, supported by cDNA:
gi_14488072, supported by cDNA: gi_20147126 [Arabidopsis
thaliana] gi|25407297|pir||B85061 hypothetical protein
AT4g04860 [imported] - Arabidopsis thaliana
gi|4115936|gb|AAD03446.1| T4B21.2 gene product
[Arabidopsis thaliana] gi|7267244|emb|CAB80851.1|
predicted protein of unknown function [Arabidopsis
thaliana] gi|14488073|gb|AAK63857.1|AF389284_1
AT4g04860/T4B21_2 [Arabidopsis thaliana]
gi|20147127|gb|AAM10280.1| AT4g04860/T4B21_2
[Arabidopsis thaliana]
Length = 244
Score = 272 bits (696), Expect = 2e-72
Identities = 132/149 (88%), Positives = 140/149 (93%)
Frame = -2
Query: 597 FFYMLLFGASVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLG 418
F YMLLFGASVLTGIVL+GGMIPYLS SFAKIIFLSNSLTFMMVYVWSKQNP+IHMSFLG
Sbjct: 96 FLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLG 155
Query: 417 LFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIK 238
LFTFTAAYLPWVLLGFS+LVGASAWVDLLGMIAGHAYYFL +VYPRMT RRPLKTPS +K
Sbjct: 156 LFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLK 215
Query: 237 ALFADDPVVVARPANVRFAAPPVDDRHQD 151
ALFAD+PVVVARP +VRFAA P D+ HQD
Sbjct: 216 ALFADEPVVVARPEDVRFAAAPFDEIHQD 244
>pir||B85249 hypothetical protein AT4g21810 [imported] - Arabidopsis thaliana
gi|7268978|emb|CAB81288.1| putative protein [Arabidopsis
thaliana]
Length = 211
Score = 260 bits (665), Expect = 8e-69
Identities = 126/149 (84%), Positives = 136/149 (90%)
Frame = -2
Query: 597 FFYMLLFGASVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLG 418
F YMLLFGA+VLTGIVL+GGMIPYLS SF+KIIFLSNSLTFMMVYVWSKQNP+IHMSFLG
Sbjct: 63 FLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLG 122
Query: 417 LFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIK 238
LFTFTAAYLPWVLLGFS+LVGASAW D LGMIAGHAYYFL VYPRMT RRPLKTPS +K
Sbjct: 123 LFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLK 182
Query: 237 ALFADDPVVVARPANVRFAAPPVDDRHQD 151
ALFAD+PVV+ARP +VRFA P D+ HQD
Sbjct: 183 ALFADEPVVIARPEDVRFAHAPFDEIHQD 211
>pir||T05463 hypothetical protein T8O5.20 - Arabidopsis thaliana
gi|2894559|emb|CAA17148.1| putative protein [Arabidopsis
thaliana]
Length = 225
Score = 260 bits (665), Expect = 8e-69
Identities = 126/149 (84%), Positives = 136/149 (90%)
Frame = -2
Query: 597 FFYMLLFGASVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLG 418
F YMLLFGA+VLTGIVL+GGMIPYLS SF+KIIFLSNSLTFMMVYVWSKQNP+IHMSFLG
Sbjct: 77 FLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLG 136
Query: 417 LFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIK 238
LFTFTAAYLPWVLLGFS+LVGASAW D LGMIAGHAYYFL VYPRMT RRPLKTPS +K
Sbjct: 137 LFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLK 196
Query: 237 ALFADDPVVVARPANVRFAAPPVDDRHQD 151
ALFAD+PVV+ARP +VRFA P D+ HQD
Sbjct: 197 ALFADEPVVIARPEDVRFAHAPFDEIHQD 225
>gb|AAL38318.1| putative protein [Arabidopsis thaliana] gi|24899743|gb|AAN65086.1|
putative protein [Arabidopsis thaliana]
Length = 244
Score = 260 bits (665), Expect = 8e-69
Identities = 126/149 (84%), Positives = 136/149 (90%)
Frame = -2
Query: 597 FFYMLLFGASVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLG 418
F YMLLFGA+VLTGIVL+GGMIPYLS SF+KIIFLSNSLTFMMVYVWSKQNP+IHMSFLG
Sbjct: 96 FLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLG 155
Query: 417 LFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIK 238
LFTFTAAYLPWVLLGFS+LVGASAW D LGMIAGHAYYFL VYPRMT RRPLKTPS +K
Sbjct: 156 LFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLK 215
Query: 237 ALFADDPVVVARPANVRFAAPPVDDRHQD 151
ALFAD+PVV+ARP +VRFA P D+ HQD
Sbjct: 216 ALFADEPVVIARPEDVRFAHAPFDEIHQD 244
>ref|NP_193912.2| putative protein; protein id: At4g21810.1, supported by cDNA:
gi_17473758 [Arabidopsis thaliana]
Length = 244
Score = 260 bits (665), Expect = 8e-69
Identities = 126/149 (84%), Positives = 136/149 (90%)
Frame = -2
Query: 597 FFYMLLFGASVLTGIVLLGGMIPYLSESFAKIIFLSNSLTFMMVYVWSKQNPFIHMSFLG 418
F YMLLFGA+VLTGIVL+GGMIPYLS SF+KIIFLSNSLTFMMVYVWSKQNP+IHMSFLG
Sbjct: 96 FLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLG 155
Query: 417 LFTFTAAYLPWVLLGFSVLVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSLIK 238
LFTFTAAYLPWVLLGFS+LVGASAW D LGMIAGHAYYFL VYPRMT RRPLKTPS +K
Sbjct: 156 LFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLK 215
Query: 237 ALFADDPVVVARPANVRFAAPPVDDRHQD 151
ALFAD+PVV+ARP +VRFA P D+ HQD
Sbjct: 216 ALFADEPVVIARPEDVRFAHAPFDEIHQD 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,109,906
Number of Sequences: 1393205
Number of extensions: 12043065
Number of successful extensions: 56673
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 54025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56524
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
