Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005149A_C01 KMC005149A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198698.1| transporter -like protein; protein id: At5g3882... 104 8e-22
dbj|BAB08638.1| amino acid transporter-like protein [Arabidopsis... 104 8e-22
dbj|BAB19353.1| hypothetical protein [Oryza sativa (japonica cul... 102 4e-21
ref|NP_566854.1| expressed protein; protein id: At3g30390.1, sup... 96 4e-19
ref|NP_191179.1| putative protein; protein id: At3g56200.1, supp... 70 3e-11
>ref|NP_198698.1| transporter -like protein; protein id: At5g38820.1 [Arabidopsis
thaliana]
Length = 456
Score = 104 bits (260), Expect = 8e-22
Identities = 48/72 (66%), Positives = 58/72 (79%)
Frame = -2
Query: 611 NFVPSIWTVFQFTGATATVCLGFIFPGAIALRDPQGVATKKDKILSIVMIFLAVFSNVVA 432
NF+PSIW FQFTGATA VC+GFIFP A+ L+D ATK+DK ++I MI LAVFSN +A
Sbjct: 379 NFIPSIWDAFQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIA 438
Query: 431 IYSNADALFRKH 396
IYS+A ALF+KH
Sbjct: 439 IYSDAYALFKKH 450
>dbj|BAB08638.1| amino acid transporter-like protein [Arabidopsis thaliana]
Length = 461
Score = 104 bits (260), Expect = 8e-22
Identities = 48/72 (66%), Positives = 58/72 (79%)
Frame = -2
Query: 611 NFVPSIWTVFQFTGATATVCLGFIFPGAIALRDPQGVATKKDKILSIVMIFLAVFSNVVA 432
NF+PSIW FQFTGATA VC+GFIFP A+ L+D ATK+DK ++I MI LAVFSN +A
Sbjct: 384 NFIPSIWDAFQFTGATAAVCIGFIFPAAVILKDRHNQATKRDKTIAICMIVLAVFSNAIA 443
Query: 431 IYSNADALFRKH 396
IYS+A ALF+KH
Sbjct: 444 IYSDAYALFKKH 455
>dbj|BAB19353.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 448
Score = 102 bits (254), Expect = 4e-21
Identities = 48/75 (64%), Positives = 57/75 (76%)
Frame = -2
Query: 611 NFVPSIWTVFQFTGATATVCLGFIFPGAIALRDPQGVATKKDKILSIVMIFLAVFSNVVA 432
NF+PSIW FQFTGATA VC+ FIFP AI LRDP +A K DKILSI MI LA+ SNVVA
Sbjct: 371 NFIPSIWDAFQFTGATAAVCIAFIFPAAITLRDPHSIAKKWDKILSIFMIVLAIVSNVVA 430
Query: 431 IYSNADALFRKHVDP 387
+YS+A ++F + P
Sbjct: 431 VYSDAYSMFHRKSSP 445
>ref|NP_566854.1| expressed protein; protein id: At3g30390.1, supported by cDNA:
gi_15529154, supported by cDNA: gi_16226266 [Arabidopsis
thaliana] gi|9294342|dbj|BAB02239.1|
gb|AAF27127.1~gene_id:T6J22.19~similar to unknown
protein [Arabidopsis thaliana]
gi|15529155|gb|AAK97672.1| AT3g30390/T6J22_16
[Arabidopsis thaliana]
gi|16226267|gb|AAL16119.1|AF428287_1 AT3g30390/T6J22_16
[Arabidopsis thaliana]
Length = 460
Score = 95.9 bits (237), Expect = 4e-19
Identities = 46/72 (63%), Positives = 55/72 (75%)
Frame = -2
Query: 611 NFVPSIWTVFQFTGATATVCLGFIFPGAIALRDPQGVATKKDKILSIVMIFLAVFSNVVA 432
NF+PSIW FQFTGATA VCLGFIFP +I L+D AT +D L+I MI LAV SN +A
Sbjct: 385 NFIPSIWDAFQFTGATAAVCLGFIFPASIILKDRHDKATNRDTTLAIFMIVLAVLSNAIA 444
Query: 431 IYSNADALFRKH 396
IYS+A ALF+K+
Sbjct: 445 IYSDAYALFKKN 456
>ref|NP_191179.1| putative protein; protein id: At3g56200.1, supported by cDNA:
gi_20453044 [Arabidopsis thaliana]
gi|11357534|pir||T47737 hypothetical protein F18O21.160
- Arabidopsis thaliana gi|7572918|emb|CAB87419.1|
putative protein [Arabidopsis thaliana]
gi|20453045|gb|AAM19768.1| AT3g56200/F18O21_160
[Arabidopsis thaliana]
Length = 435
Score = 69.7 bits (169), Expect = 3e-11
Identities = 32/66 (48%), Positives = 48/66 (72%)
Frame = -2
Query: 605 VPSIWTVFQFTGATATVCLGFIFPGAIALRDPQGVATKKDKILSIVMIFLAVFSNVVAIY 426
VP IW FQF G+T TV + FIFP AI LR+ GV+T ++KI++ +M+ LAV ++++AI
Sbjct: 367 VPDIWYFFQFMGSTITVSIAFIFPAAIVLRNIHGVSTSREKIVAAIMLVLAVATSIIAIS 426
Query: 425 SNADAL 408
+N +L
Sbjct: 427 TNLYSL 432
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,848,284
Number of Sequences: 1393205
Number of extensions: 10946340
Number of successful extensions: 28821
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28804
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
