Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005147A_C01 KMC005147A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201528.1| putative protein; protein id: At5g67270.1, supp... 276 9e-74
gb|AAM93680.1| putative microtubule-associated protein [Oryza sa... 245 2e-64
dbj|BAC42296.1| putative microtubule-associated protein EB1 [Ara... 216 2e-55
ref|NP_201056.1| microtubule-associated protein EB1-like protein... 216 2e-55
gb|AAO62368.1| microtubule-associated protein EB1 [Chlamydomonas... 170 1e-41
>ref|NP_201528.1| putative protein; protein id: At5g67270.1, supported by cDNA:
38358. [Arabidopsis thaliana] gi|9759276|dbj|BAB09646.1|
contains similarity to APC-binding protein
EB1~gene_id:K3G17.3 [Arabidopsis thaliana]
gi|21593362|gb|AAM65311.1| microtubule-associated
protein EB1-like protein [Arabidopsis thaliana]
Length = 329
Score = 276 bits (707), Expect = 9e-74
Identities = 136/172 (79%), Positives = 153/172 (88%), Gaps = 3/172 (1%)
Frame = +1
Query: 46 MAINIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKV 225
MA NIG+MD+AYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQL+D VHPG VPMHKV
Sbjct: 1 MATNIGMMDSAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLMDSVHPGTVPMHKV 60
Query: 226 NFDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 405
NFDAK+EY+MIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMK+YCDSVN G
Sbjct: 61 NFDAKSEYEMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKKYCDSVNGG 120
Query: 406 LQHNYNPRERREVCKGGKEATRKSAHSQSSNKGSTAQRPP---SSHNSRRNE 552
QHNY+ ERRE KGGKEAT+++A +Q S K S++ PP SS+ +R++E
Sbjct: 121 -QHNYHALERREASKGGKEATKRAAATQQSGKSSSSSAPPRPSSSNGTRKHE 171
>gb|AAM93680.1| putative microtubule-associated protein [Oryza sativa (japonica
cultivar-group)]
Length = 332
Score = 245 bits (626), Expect = 2e-64
Identities = 123/169 (72%), Positives = 138/169 (80%), Gaps = 3/169 (1%)
Frame = +1
Query: 49 AINIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKVN 228
A NIG+MD AYFVGR+EILAWIN+TLQL LSKVEEA SGAV CQL+D HPG VPMHKVN
Sbjct: 3 ASNIGMMDGAYFVGRNEILAWINTTLQLGLSKVEEAASGAVACQLMDAAHPGAVPMHKVN 62
Query: 229 FDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSGL 408
FDAK EY+MIQNYKVLQDVFNKLKITKHIEV+KL KGRPLDNLEFMQWMKRYCDSVN G
Sbjct: 63 FDAKTEYEMIQNYKVLQDVFNKLKITKHIEVNKLTKGRPLDNLEFMQWMKRYCDSVNGGF 122
Query: 409 QHNYNPRERREVCKGGKEATRK-SAHSQSSNKGSTA--QRPPSSHNSRR 546
++YN ERRE KGGKE R+ S SQ+ K S+A + SSH +++
Sbjct: 123 MNSYNASERRESSKGGKETNRRTSVPSQAPAKSSSATHKAQASSHGAKK 171
>dbj|BAC42296.1| putative microtubule-associated protein EB1 [Arabidopsis thaliana]
Length = 194
Score = 216 bits (549), Expect = 2e-55
Identities = 104/168 (61%), Positives = 136/168 (80%), Gaps = 2/168 (1%)
Frame = +1
Query: 46 MAINIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKV 225
MA NIG+MD+AYFVGR+EIL+WIN L LNLS++EEA SGAV CQ+LD+ PG+VPMHKV
Sbjct: 1 MATNIGMMDSAYFVGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKV 60
Query: 226 NFDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 405
NF+AKNEY+MIQNYKV+Q+VF KLKITK +EV++LVKGRPLDNLEF+QW+KR+CDS+N G
Sbjct: 61 NFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDNLEFLQWLKRFCDSINGG 120
Query: 406 LQH-NYNPRERREVCKGGKEATRK-SAHSQSSNKGSTAQRPPSSHNSR 543
+ + NYNP ERR +GG+E + K S+ S + + PP + +++
Sbjct: 121 IMNENYNPVERRS--RGGREKSVKGSSKISKSLQTNNMHHPPVATSNK 166
>ref|NP_201056.1| microtubule-associated protein EB1-like protein; protein id:
At5g62500.1, supported by cDNA: 112876. [Arabidopsis
thaliana] gi|10178081|dbj|BAB11500.1|
microtubule-associated protein EB1-like protein
[Arabidopsis thaliana] gi|21536831|gb|AAM61163.1|
microtubule-associated protein EB1-like protein
[Arabidopsis thaliana]
Length = 293
Score = 216 bits (549), Expect = 2e-55
Identities = 104/168 (61%), Positives = 136/168 (80%), Gaps = 2/168 (1%)
Frame = +1
Query: 46 MAINIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKV 225
MA NIG+MD+AYFVGR+EIL+WIN L LNLS++EEA SGAV CQ+LD+ PG+VPMHKV
Sbjct: 1 MATNIGMMDSAYFVGRNEILSWINDRLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKV 60
Query: 226 NFDAKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSVNSG 405
NF+AKNEY+MIQNYKV+Q+VF KLKITK +EV++LVKGRPLDNLEF+QW+KR+CDS+N G
Sbjct: 61 NFEAKNEYEMIQNYKVMQEVFTKLKITKPLEVNRLVKGRPLDNLEFLQWLKRFCDSINGG 120
Query: 406 LQH-NYNPRERREVCKGGKEATRK-SAHSQSSNKGSTAQRPPSSHNSR 543
+ + NYNP ERR +GG+E + K S+ S + + PP + +++
Sbjct: 121 IMNENYNPVERRS--RGGREKSVKGSSKISKSLQTNNMHHPPVATSNK 166
>gb|AAO62368.1| microtubule-associated protein EB1 [Chlamydomonas reinhardtii]
Length = 280
Score = 170 bits (430), Expect = 1e-41
Identities = 81/136 (59%), Positives = 101/136 (73%), Gaps = 2/136 (1%)
Frame = +1
Query: 55 NIGIMDAAYFVGRSEILAWINSTLQLNLSKVEEACSGAVHCQLLDVVHPGIVPMHKVNFD 234
+ G+ D YF+GR+EIL WIN TL L L+KVE+ C+GAV CQLLDV+HPG VPM KV+++
Sbjct: 6 SFGLQDPHYFLGRAEILGWINDTLGLRLTKVEDTCNGAVACQLLDVLHPGAVPMAKVDYN 65
Query: 235 AKNEYDMIQNYKVLQDVFNKLKITKHIEVSKLVKGRPLDNLEFMQWMKRYCDSV--NSGL 408
A +EY MI NYKVLQD FNKLKI K++EV++LVKGRPLDN+EFMQW K Y D +
Sbjct: 66 ANSEYQMINNYKVLQDCFNKLKIDKYVEVARLVKGRPLDNMEFMQWFKAYWDQIIPPGSA 125
Query: 409 QHNYNPRERREVCKGG 456
Y+ RR +CK G
Sbjct: 126 PAPYDGPSRRALCKTG 141
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 480,758,520
Number of Sequences: 1393205
Number of extensions: 9768619
Number of successful extensions: 35582
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 34255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35545
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
