KMC005143A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005143A_C01 KMC005143A_c01
agcaactacgtagcTGAAAGAGATAAATTACAACTGCCCCAAATGAAGGCACGGGGATGG
GACAAGCACTAGATTGGACCAACTATCTATCTTCAAAGAGATAAATTACAATGCCCCAAA
TGAATGCACAATGAGACTTAGGTATGAAGAAGTCAAAGGGACAAAAGATAAGTTAGAAAC
AAAATCGATGAAAACTACATTACACGAATCATGGAATTGTAATCTTGAGTACATCAACCT
TTCGGTCACAACATCACCAGAGCAAAAAATACAGCAATAGCAGATATCAAATACTGAAGG
CTTGTCACTTGCAGGTTCATACTTGCTCCAAATGGGCTTGAAGGTCCAAGGGCCGTAGGA
GGTAAACTCACCCCACCAGGGTTAGAGCTTCCGGAAAATATACAGGATCCAGGACTTGGA
TCCTGGGTAGTAACTTCAGCAGTACCATCAAAGTCACATGTTCCCCCAGCATTGTTCTTT
TTCTGATAATAATCATTA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005143A_C01 KMC005143A_c01
         (498 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB01763.1| beta-1,3-glucanase-like protein [Arabidopsis tha...    79  2e-14
ref|NP_187965.1| glycosyl hydrolase family 17; protein id: At3g1...    79  2e-14
ref|NP_172647.1| glycosyl hydrolase family 17; protein id: At1g1...    58  5e-08
gb|AAO42272.1| unknown protein [Arabidopsis thaliana]                  58  5e-08
gb|AAK85402.1| beta-1,3-glucanase [Camellia sinensis]                  57  1e-07

>dbj|BAB01763.1| beta-1,3-glucanase-like protein [Arabidopsis thaliana]
          Length = 469

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
 Frame = -2

Query: 497 NDYYQKKNNAGGTCDFDGTAEVTTQDPSPGSCIFSGSSNPGGV--SLPPTALGPSSPFGA 324
           NDYYQK  +AGGTCDFDGTA  TT+DPS  +C ++GS N      + PP ALGP+SP G 
Sbjct: 377 NDYYQKMKSAGGTCDFDGTAITTTRDPSYRTCAYTGSLNANATNGNFPPDALGPASPLGG 436

Query: 323 SMNLQV 306
           + N ++
Sbjct: 437 NANARI 442

>ref|NP_187965.1| glycosyl hydrolase family 17; protein id: At3g13560.1, supported by
           cDNA: gi_14334497, supported by cDNA: gi_17104804
           [Arabidopsis thaliana] gi|14334498|gb|AAK59446.1|
           putative glucan endo-1,3-beta-glucosidase precursor
           [Arabidopsis thaliana] gi|17104805|gb|AAL34291.1|
           putative glucan endo-1,3-beta-glucosidase precursor
           [Arabidopsis thaliana]
          Length = 505

 Score = 79.3 bits (194), Expect = 2e-14
 Identities = 36/66 (54%), Positives = 46/66 (69%), Gaps = 2/66 (3%)
 Frame = -2

Query: 497 NDYYQKKNNAGGTCDFDGTAEVTTQDPSPGSCIFSGSSNPGGV--SLPPTALGPSSPFGA 324
           NDYYQK  +AGGTCDFDGTA  TT+DPS  +C ++GS N      + PP ALGP+SP G 
Sbjct: 413 NDYYQKMKSAGGTCDFDGTAITTTRDPSYRTCAYTGSLNANATNGNFPPDALGPASPLGG 472

Query: 323 SMNLQV 306
           + N ++
Sbjct: 473 NANARI 478

>ref|NP_172647.1| glycosyl hydrolase family 17; protein id: At1g11820.1 [Arabidopsis
           thaliana]
          Length = 511

 Score = 58.2 bits (139), Expect = 5e-08
 Identities = 25/41 (60%), Positives = 28/41 (67%)
 Frame = -2

Query: 497 NDYYQKKNNAGGTCDFDGTAEVTTQDPSPGSCIFSGSSNPG 375
           N YYQK+  A G+CDF G A +TT DPS GSCIF GS   G
Sbjct: 432 NSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIFPGSKKVG 472

>gb|AAO42272.1| unknown protein [Arabidopsis thaliana]
          Length = 332

 Score = 58.2 bits (139), Expect = 5e-08
 Identities = 25/41 (60%), Positives = 28/41 (67%)
 Frame = -2

Query: 497 NDYYQKKNNAGGTCDFDGTAEVTTQDPSPGSCIFSGSSNPG 375
           N YYQK+  A G+CDF G A +TT DPS GSCIF GS   G
Sbjct: 253 NSYYQKEGRASGSCDFKGVAMITTTDPSHGSCIFPGSKKVG 293

>gb|AAK85402.1| beta-1,3-glucanase [Camellia sinensis]
          Length = 350

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = -2

Query: 491 YYQKKNNAGGTCDFDGTAEVTTQDPSPGSCIFSGSSNPGGVSLPPTA 351
           YYQ+   A GTCDF+G A +TT +P+ GSC+F GS+   G  L  TA
Sbjct: 267 YYQQMGKASGTCDFNGVATITTTNPTHGSCVFPGSNGKNGTFLNSTA 313

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,373,408
Number of Sequences: 1393205
Number of extensions: 9557844
Number of successful extensions: 32393
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 27825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32274
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MPD048h01_f AV773276 1 497
2 MPD019b02_f AV771291 11 499




Lotus japonicus
Kazusa DNA Research Institute