Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005142A_C01 KMC005142A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182103.1| putative phosphomannomutase; protein id: At2g45... 160 4e-44
emb|CAD21466.1| phosphomannomutase [Kluyveromyces lactis] 135 5e-34
ref|NP_594325.1| phosphomannomutase [Schizosaccharomyces pombe] ... 129 3e-32
dbj|BAA19164.1| phosphomannomutase [Schizosaccharomyces pombe] 129 3e-32
pir||T49495 probable phosphomannomutase [imported] - Neurospora ... 125 6e-32
>ref|NP_182103.1| putative phosphomannomutase; protein id: At2g45790.1, supported by
cDNA: 998., supported by cDNA: gi_15292744, supported by
cDNA: gi_21280918 [Arabidopsis thaliana]
gi|12585297|sp|O80840|PMM_ARATH Probable
phosphomannomutase (PMM) gi|7444149|pir||T02468 probable
phosphomannomutase At2g45790 [imported] - Arabidopsis
thaliana gi|3386615|gb|AAC28545.1| putative
phosphomannomutase [Arabidopsis thaliana]
gi|15292745|gb|AAK92741.1| putative phosphomannomutase
[Arabidopsis thaliana] gi|21280919|gb|AAM45012.1|
putative phosphomannomutase [Arabidopsis thaliana]
gi|21618186|gb|AAM67236.1| putative phosphomannomutase
[Arabidopsis thaliana]
Length = 246
Score = 160 bits (406), Expect(2) = 4e-44
Identities = 72/92 (78%), Positives = 85/92 (92%)
Frame = -1
Query: 575 MLNVSPIGRDCSLEERDEFEKYDKVQYLRPRMVSVLREKFAHLNLTLSIGGQISFDVFPQ 396
MLNVSPIGR+CS EERDEFE+YDKVQ +RP+MV+ LRE+FAHLNLT SIGGQISFDVFP+
Sbjct: 127 MLNVSPIGRNCSQEERDEFERYDKVQNIRPKMVAELRERFAHLNLTFSIGGQISFDVFPK 186
Query: 395 AWD*TYCLRYLDGFNEIHFFGDKTYKGGNDHD 300
WD TYCL+YL+ F+EIHFFGDKTY+GGND++
Sbjct: 187 GWDKTYCLQYLEDFSEIHFFGDKTYEGGNDYE 218
Score = 39.3 bits (90), Expect(2) = 4e-44
Identities = 14/23 (60%), Positives = 21/23 (90%)
Frame = -3
Query: 300 QLYESERTIGHTVTSPEDTIKQC 232
++YES +TIGH+VTSP+DT+ +C
Sbjct: 218 EIYESPKTIGHSVTSPDDTVAKC 240
>emb|CAD21466.1| phosphomannomutase [Kluyveromyces lactis]
Length = 254
Score = 135 bits (339), Expect(2) = 5e-34
Identities = 62/94 (65%), Positives = 77/94 (80%), Gaps = 2/94 (2%)
Frame = -1
Query: 575 MLNVSPIGRDCSLEERDEFEKYDKVQYLRPRMVSVLREKFAHLNLTLSIGGQISFDVFPQ 396
M+NVSPIGR+ S ER+EFE++DK +R + V L+++FAHL+LT SIGGQISFDVFP
Sbjct: 133 MINVSPIGRNASTAERNEFEQFDKEHQVRAKFVEALKKEFAHLSLTFSIGGQISFDVFPT 192
Query: 395 AWD*TYCLRYL--DGFNEIHFFGDKTYKGGNDHD 300
WD TYCLR++ DGF EIHFFGDKTYKGGND++
Sbjct: 193 GWDKTYCLRHVEADGFKEIHFFGDKTYKGGNDYE 226
Score = 31.2 bits (69), Expect(2) = 5e-34
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 300 QLYESERTIGHTVTSPEDTIK 238
++Y +RTIGH+V SP DT++
Sbjct: 226 EIYVDDRTIGHSVESPADTVR 246
>ref|NP_594325.1| phosphomannomutase [Schizosaccharomyces pombe]
gi|12585298|sp|Q9UTJ2|PMM_SCHPO Phosphomannomutase (PMM)
gi|11278122|pir||T50086 phosphomannomutase [imported] -
fission yeast (Schizosaccharomyces pombe)
gi|6448612|emb|CAB61218.1| phosphomannomutase
[Schizosaccharomyces pombe]
Length = 257
Score = 129 bits (325), Expect(2) = 3e-32
Identities = 59/94 (62%), Positives = 76/94 (80%), Gaps = 2/94 (2%)
Frame = -1
Query: 575 MLNVSPIGRDCSLEERDEFEKYDKVQYLRPRMVSVLREKFAHLNLTLSIGGQISFDVFPQ 396
M+N+SP+GR+ + EER+EFE++DK + +R MV VLREKF LT SIGGQISFDVFP
Sbjct: 136 MINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDVFPA 195
Query: 395 AWD*TYCLRYL--DGFNEIHFFGDKTYKGGNDHD 300
WD TYCL+++ +GF+ IHFFGDKTYKGGND++
Sbjct: 196 GWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYE 229
Score = 30.8 bits (68), Expect(2) = 3e-32
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 300 QLYESERTIGHTVTSPEDTIKQ 235
+++ RTIGH+VT+P+DTI +
Sbjct: 229 EIFVDPRTIGHSVTNPDDTIAE 250
>dbj|BAA19164.1| phosphomannomutase [Schizosaccharomyces pombe]
Length = 256
Score = 129 bits (325), Expect(2) = 3e-32
Identities = 59/94 (62%), Positives = 76/94 (80%), Gaps = 2/94 (2%)
Frame = -1
Query: 575 MLNVSPIGRDCSLEERDEFEKYDKVQYLRPRMVSVLREKFAHLNLTLSIGGQISFDVFPQ 396
M+N+SP+GR+ + EER+EFE++DK + +R MV VLREKF LT SIGGQISFDVFP
Sbjct: 135 MINISPVGRNANTEERNEFERFDKGRKIRATMVDVLREKFKDYGLTFSIGGQISFDVFPA 194
Query: 395 AWD*TYCLRYL--DGFNEIHFFGDKTYKGGNDHD 300
WD TYCL+++ +GF+ IHFFGDKTYKGGND++
Sbjct: 195 GWDKTYCLQHVEKEGFDTIHFFGDKTYKGGNDYE 228
Score = 30.8 bits (68), Expect(2) = 3e-32
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = -3
Query: 300 QLYESERTIGHTVTSPEDTIKQ 235
+++ RTIGH+VT+P+DTI +
Sbjct: 228 EIFVDPRTIGHSVTNPDDTIAE 249
>pir||T49495 probable phosphomannomutase [imported] - Neurospora crassa
gi|28925518|gb|EAA34550.1| probable phosphomannomutase
[MIPS] [Neurospora crassa]
Length = 273
Score = 125 bits (314), Expect(2) = 6e-32
Identities = 60/101 (59%), Positives = 74/101 (72%), Gaps = 9/101 (8%)
Frame = -1
Query: 575 MLNVSPIGRDCSLEERDEFEKYDKVQYLRPRMVSVLREKFAHLNLTLSIGGQISFDVFPQ 396
M+NVSPIGR+ S ER+EFEK+DK +R MV LRE+F HL LT SIGGQISFDVFP
Sbjct: 145 MINVSPIGRNASTAERNEFEKFDKEAGVRKEMVEKLRERFGHLGLTFSIGGQISFDVFPT 204
Query: 395 AWD*TYCLRYLDG---------FNEIHFFGDKTYKGGNDHD 300
WD TYCL++L+ ++ IHFFGDKT+KGGND++
Sbjct: 205 GWDKTYCLQHLENEAKKAGGITYDTIHFFGDKTFKGGNDYE 245
Score = 33.9 bits (76), Expect(2) = 6e-32
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -3
Query: 300 QLYESERTIGHTVTSPEDT 244
++YE RTIGH+VT PEDT
Sbjct: 245 EIYEDPRTIGHSVTGPEDT 263
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,439,313
Number of Sequences: 1393205
Number of extensions: 9427584
Number of successful extensions: 22688
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 22015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22658
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
