Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005141A_C01 KMC005141A_c01
(1158 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||DSPMN superoxide dismutase (EC 1.15.1.1) (Mn) precursor - g... 401 e-111
sp|P27084|SODM_PEA Superoxide dismutase [Mn], mitochondrial prec... 380 e-104
sp|P35017|SODM_HEVBR Superoxide dismutase [Mn], mitochondrial pr... 377 e-103
pir||T50828 superoxide dismutase (EC 1.15.1.1) (Mn) 1 [similarit... 373 e-102
pir||T50831 superoxide dismutase (EC 1.15.1.1) (Mn) [similarity]... 371 e-101
>pir||DSPMN superoxide dismutase (EC 1.15.1.1) (Mn) precursor - garden pea
gi|20902|emb|CAA42737.1| superoxide dismutase [Pisum
sativum]
Length = 240
Score = 401 bits (1031), Expect = e-111
Identities = 198/245 (80%), Positives = 213/245 (86%)
Frame = -3
Query: 1138 MAVRTLLSRKTLASVLLRNDIGAGGMAAAAAAGAAQTHSRGIHALTLPDLGYDYGALEPV 959
MA RTLL RKTL+SVL RND G A AAA+ T SRG+H TLPDL YDYGALEPV
Sbjct: 1 MAARTLLCRKTLSSVL-RNDAKPIGAAIAAAS----TQSRGLHVFTLPDLAYDYGALEPV 55
Query: 958 ISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIF 779
ISGEIMQIHHQKHHQTYITNYNKALEQL DA+AK+D+S VKLQ+AIKFNGGGH+NHSIF
Sbjct: 56 ISGEIMQIHHQKHHQTYITNYNKALEQLHDAVAKADTSTTVKLQNAIKFNGGGHINHSIF 115
Query: 778 WKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNK 599
WKNLAP EGGGE P SLGWAIDT+FGS EALI+K+NAEGAALQ SGWVWLGLDK+ +
Sbjct: 116 WKNLAPVSEGGGEPPKESLGWAIDTNFGSLEALIQKINAEGAALQASGWVWLGLDKDLKR 175
Query: 598 LVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVY 419
LVVETTANQDPLVTKG+SLVPL IDVWEHAYYLQYKNVRPDYLKNIWKVINWK+ SEVY
Sbjct: 176 LVVETTANQDPLVTKGASLVPLLWIDVWEHAYYLQYKNVRPDYLKNIWKVINWKHASEVY 235
Query: 418 EKESS 404
EKESS
Sbjct: 236 EKESS 240
>sp|P27084|SODM_PEA Superoxide dismutase [Mn], mitochondrial precursor
gi|945044|gb|AAA74442.1| manganese superoxide dismutase
precursor
Length = 233
Score = 380 bits (975), Expect = e-104
Identities = 193/245 (78%), Positives = 208/245 (84%)
Frame = -3
Query: 1138 MAVRTLLSRKTLASVLLRNDIGAGGMAAAAAAGAAQTHSRGIHALTLPDLGYDYGALEPV 959
MA RTLL RKTL+SVL RND G A AAA+ T SRG+H TLPDL YDYGALEPV
Sbjct: 1 MAARTLLCRKTLSSVL-RNDAKPIGAAIAAAS----TQSRGLHVFTLPDLAYDYGALEPV 55
Query: 958 ISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIF 779
ISGEIMQIHHQKHHQTYITNYNKALEQL DA+AK+D+S VKLQ+AIKFNGGGH+NHSIF
Sbjct: 56 ISGEIMQIHHQKHHQTYITNYNKALEQLHDAVAKADTSTTVKLQNAIKFNGGGHINHSIF 115
Query: 778 WKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNK 599
WKNLAP EGGGE P SLGWAIDT+FGS EALI+K+NAEGAALQ WLGLDK+ +
Sbjct: 116 WKNLAPVSEGGGEPPKESLGWAIDTNFGSLEALIQKINAEGAALQ-----WLGLDKDLKR 170
Query: 598 LVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVY 419
LVVETT QDPLVTKG+SLVPL GIDVWEHAYYLQYKNVRPDYLKNIWKVINWK+ SEVY
Sbjct: 171 LVVETT--QDPLVTKGASLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKHASEVY 228
Query: 418 EKESS 404
EKESS
Sbjct: 229 EKESS 233
>sp|P35017|SODM_HEVBR Superoxide dismutase [Mn], mitochondrial precursor
gi|542013|pir||S39492 superoxide dismutase (EC 1.15.1.1)
(Mn) - Para rubber tree gi|348137|gb|AAA16792.1|
superoxide dismutase (manganese)
Length = 233
Score = 377 bits (967), Expect = e-103
Identities = 187/243 (76%), Positives = 199/243 (80%)
Frame = -3
Query: 1138 MAVRTLLSRKTLASVLLRNDIGAGGMAAAAAAGAAQTHSRGIHALTLPDLGYDYGALEPV 959
MA+R+L++RK L S A AA G Q RG+ +LPDL YDYGALEP
Sbjct: 1 MALRSLVTRKNLPS------------AFKAATGLGQL--RGLQTFSLPDLPYDYGALEPA 46
Query: 958 ISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIF 779
ISGEIMQ+HHQKHHQTYITNYNKALEQL DAI K DS+AVVKLQSAIKFNGGGHVNHSIF
Sbjct: 47 ISGEIMQLHHQKHHQTYITNYNKALEQLNDAIEKGDSAAVVKLQSAIKFNGGGHVNHSIF 106
Query: 778 WKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNK 599
WKNLAP REGGGE PHGSLGWAID FGS E LI+ +NAEGAALQGSGWVWL LDKE K
Sbjct: 107 WKNLAPVREGGGELPHGSLGWAIDADFGSLEKLIQLMNAEGAALQGSGWVWLALDKELKK 166
Query: 598 LVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVY 419
LVVETTANQDPLVTKG +LVPL GIDVWEHAYYLQYKNVRPDYLKNIWKV+NWKY SEVY
Sbjct: 167 LVVETTANQDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVMNWKYASEVY 226
Query: 418 EKE 410
KE
Sbjct: 227 AKE 229
>pir||T50828 superoxide dismutase (EC 1.15.1.1) (Mn) 1 [similarity] - Prunus
persica gi|6006619|emb|CAB56851.1| manganese superoxide
dismutase 1 [Prunus persica]
Length = 228
Score = 373 bits (957), Expect = e-102
Identities = 180/244 (73%), Positives = 199/244 (80%)
Frame = -3
Query: 1138 MAVRTLLSRKTLASVLLRNDIGAGGMAAAAAAGAAQTHSRGIHALTLPDLGYDYGALEPV 959
MA+RTL+SR+TLA+ L + RG+ +LPDL Y+YGALEP
Sbjct: 1 MALRTLVSRRTLATGL-----------------GFRQQLRGLQTFSLPDLPYNYGALEPA 43
Query: 958 ISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIF 779
ISG+IMQ+HHQ HHQTY+TNYNKALEQL DAI+K D+ V KL SAIKFNGGGH+NHSIF
Sbjct: 44 ISGDIMQLHHQNHHQTYVTNYNKALEQLHDAISKGDAPTVAKLHSAIKFNGGGHINHSIF 103
Query: 778 WKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNK 599
WKNLAP REGGGE P GSLGWAIDT+FGS EAL++K+NAEGAALQGSGWVWL LDKE K
Sbjct: 104 WKNLAPVREGGGEPPKGSLGWAIDTNFGSLEALVQKMNAEGAALQGSGWVWLALDKELKK 163
Query: 598 LVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVY 419
LVVETTANQDPLVTKG +LVPL GIDVWEHAYYLQYKNVRPDYLKNIWKVINWKY SEVY
Sbjct: 164 LVVETTANQDPLVTKGPTLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVY 223
Query: 418 EKES 407
EKES
Sbjct: 224 EKES 227
>pir||T50831 superoxide dismutase (EC 1.15.1.1) (Mn) [similarity] - Zantedeschia
aethiopica gi|3719457|gb|AAC63379.1| manganese superoxide
dismutase [Zantedeschia aethiopica]
Length = 240
Score = 371 bits (953), Expect = e-101
Identities = 184/245 (75%), Positives = 203/245 (82%)
Frame = -3
Query: 1138 MAVRTLLSRKTLASVLLRNDIGAGGMAAAAAAGAAQTHSRGIHALTLPDLGYDYGALEPV 959
MA +TLL++K L + L RN GA + A A G Q +R + +LPDL YDYG+LEP
Sbjct: 1 MAFQTLLAKKALGTAL-RN--GAAELGLAPALGLCQ--ARKLQTFSLPDLPYDYGSLEPA 55
Query: 958 ISGEIMQIHHQKHHQTYITNYNKALEQLQDAIAKSDSSAVVKLQSAIKFNGGGHVNHSIF 779
ISGEIM+IHHQKHHQ YITNYNKALEQL +AIAK D+S VV LQSAIKFNGGGHVNHSIF
Sbjct: 56 ISGEIMRIHHQKHHQAYITNYNKALEQLDEAIAKGDASKVVGLQSAIKFNGGGHVNHSIF 115
Query: 778 WKNLAPPREGGGESPHGSLGWAIDTHFGSFEALIKKVNAEGAALQGSGWVWLGLDKEFNK 599
WKNLAP +EGGGE P G+LGWAIDT GSFEALI+K++AEGAALQGSGWVWL LDKE K
Sbjct: 116 WKNLAPTKEGGGEPPKGALGWAIDTDLGSFEALIQKISAEGAALQGSGWVWLALDKELKK 175
Query: 598 LVVETTANQDPLVTKGSSLVPLFGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYVSEVY 419
+ VETTANQDPLVTKG LVPL GIDVWEHAYYLQYKNVRPDYLKNIW VINWKY SEVY
Sbjct: 176 VTVETTANQDPLVTKGLHLVPLLGIDVWEHAYYLQYKNVRPDYLKNIWGVINWKYASEVY 235
Query: 418 EKESS 404
EKES+
Sbjct: 236 EKESA 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,086,683,369
Number of Sequences: 1393205
Number of extensions: 26683511
Number of successful extensions: 96505
Number of sequences better than 10.0: 914
Number of HSP's better than 10.0 without gapping: 81728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93185
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 71380041720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
