Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005140A_C01 KMC005140A_c01
(563 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL13304.1|AF417577_1 leucine zipper-containing protein [Euph... 287 5e-77
gb|AAF63476.1| putative dicarboxylate diiron protein [Arabidopsi... 280 9e-75
ref|NP_191253.1| leucine zipper-containing protein AT103; protei... 280 9e-75
gb|AAB18942.1| AT103 [Arabidopsis thaliana] 261 3e-69
dbj|BAA87823.1| unnamed protein product [Oryza sativa (japonica ... 260 9e-69
>gb|AAL13304.1|AF417577_1 leucine zipper-containing protein [Euphorbia esula]
Length = 405
Score = 287 bits (735), Expect = 5e-77
Identities = 149/174 (85%), Positives = 156/174 (89%), Gaps = 5/174 (2%)
Frame = +2
Query: 56 PKFSNP-RTISHS-KFSTVRMSATT---TPPSSTKPSKKANKTSIKETLLTPRFYTTDFD 220
PKF NP RT S S KFST++MSAT+ T ++TKPSKK NK I ETLLTPRFYTTDFD
Sbjct: 13 PKFINPMRTFSSSSKFSTIKMSATSQSNTTTTATKPSKKGNKKEINETLLTPRFYTTDFD 72
Query: 221 EMETLFNTEINKNLNEHEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFL 400
EMETLFNTEINK LN+ EFEALLQEFKTDYNQTHFVRNKEFKEAADK+ GPLRQIFVEFL
Sbjct: 73 EMETLFNTEINKKLNQSEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFL 132
Query: 401 ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNXGLSDFN 562
ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN GLSDFN
Sbjct: 133 ERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 186
>gb|AAF63476.1| putative dicarboxylate diiron protein [Arabidopsis thaliana]
Length = 409
Score = 280 bits (716), Expect = 9e-75
Identities = 148/182 (81%), Positives = 161/182 (88%), Gaps = 5/182 (2%)
Frame = +2
Query: 32 ISKFTNAAPKFSNP-RTISHSKFSTV-RMSATTTPP---SSTKPSKKANKTSIKETLLTP 196
ISKF++ PK SNP + +S +FSTV RMSA+++PP ++T SKK K I+E+LLTP
Sbjct: 11 ISKFSS--PKLSNPSKFLSGRRFSTVIRMSASSSPPPPTTATSKSKKGTKKEIQESLLTP 68
Query: 197 RFYTTDFDEMETLFNTEINKNLNEHEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPL 376
RFYTTDF+EME LFNTEINKNLNE EFEALLQEFKTDYNQTHFVRNKEFKEAADKL GPL
Sbjct: 69 RFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPL 128
Query: 377 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNXGLSD 556
RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN GLSD
Sbjct: 129 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD 188
Query: 557 FN 562
FN
Sbjct: 189 FN 190
>ref|NP_191253.1| leucine zipper-containing protein AT103; protein id: At3g56940.1,
supported by cDNA: gi_1033194, supported by cDNA:
gi_7542485 [Arabidopsis thaliana]
gi|11281557|pir||T47754 leucine zipper-containing
protein AT103 - Arabidopsis thaliana
gi|6911864|emb|CAB72164.1| leucine zipper-containing
protein AT103 [Arabidopsis thaliana]
Length = 409
Score = 280 bits (716), Expect = 9e-75
Identities = 148/182 (81%), Positives = 161/182 (88%), Gaps = 5/182 (2%)
Frame = +2
Query: 32 ISKFTNAAPKFSNP-RTISHSKFSTV-RMSATTTPP---SSTKPSKKANKTSIKETLLTP 196
ISKF++ PK SNP + +S +FSTV RMSA+++PP ++T SKK K I+E+LLTP
Sbjct: 11 ISKFSS--PKLSNPSKFLSGRRFSTVIRMSASSSPPPPTTATSKSKKGTKKEIQESLLTP 68
Query: 197 RFYTTDFDEMETLFNTEINKNLNEHEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPL 376
RFYTTDF+EME LFNTEINKNLNE EFEALLQEFKTDYNQTHFVRNKEFKEAADKL GPL
Sbjct: 69 RFYTTDFEEMEQLFNTEINKNLNEAEFEALLQEFKTDYNQTHFVRNKEFKEAADKLQGPL 128
Query: 377 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNXGLSD 556
RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN GLSD
Sbjct: 129 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSD 188
Query: 557 FN 562
FN
Sbjct: 189 FN 190
>gb|AAB18942.1| AT103 [Arabidopsis thaliana]
Length = 373
Score = 261 bits (668), Expect = 3e-69
Identities = 132/154 (85%), Positives = 140/154 (90%), Gaps = 3/154 (1%)
Frame = +2
Query: 110 MSATTTPP---SSTKPSKKANKTSIKETLLTPRFYTTDFDEMETLFNTEINKNLNEHEFE 280
MSA+++PP ++T SKK K I+E+LLTPRFYTTDF+EME LFNTEINKNLNE EFE
Sbjct: 1 MSASSSPPPPTTATSKSKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFE 60
Query: 281 ALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 460
ALLQEFKTDYNQTHFVRNKEFKEAADKL GPLRQIFVEFLERSCTAEFSGFLLYKELGRR
Sbjct: 61 ALLQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKELGRR 120
Query: 461 LKKTNPVVAEIFSLMSRDEARHAGFLNXGLSDFN 562
KKTNPVVAEIFSLMSRDEARHAGFLN GLSDFN
Sbjct: 121 SKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 154
>dbj|BAA87823.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
gi|6721522|dbj|BAA89564.1| unnamed protein product
[Oryza sativa (japonica cultivar-group)]
Length = 408
Score = 260 bits (664), Expect = 9e-69
Identities = 129/168 (76%), Positives = 142/168 (83%), Gaps = 2/168 (1%)
Frame = +2
Query: 65 SNPRTISHSKFSTVRMSATTTPPSSTKPS--KKANKTSIKETLLTPRFYTTDFDEMETLF 238
+ PR +S + R++++ P + KP KK KT I+ETLLTPRFYTTDFDEME LF
Sbjct: 22 AKPRVVSSRRIVRFRVASSAAAPPAAKPGTPKKRGKTEIQETLLTPRFYTTDFDEMERLF 81
Query: 239 NTEINKNLNEHEFEALLQEFKTDYNQTHFVRNKEFKEAADKLDGPLRQIFVEFLERSCTA 418
N EINK LN+ EF+ALLQEFKTDYNQTHFVRN EFK AADK++GPLRQIFVEFLERSCTA
Sbjct: 82 NAEINKQLNQEEFDALLQEFKTDYNQTHFVRNPEFKAAADKMEGPLRQIFVEFLERSCTA 141
Query: 419 EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNXGLSDFN 562
EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLN GLSDFN
Sbjct: 142 EFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFN 189
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,169,311
Number of Sequences: 1393205
Number of extensions: 11178214
Number of successful extensions: 41074
Number of sequences better than 10.0: 98
Number of HSP's better than 10.0 without gapping: 38036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40785
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
