Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005139A_C02 KMC005139A_c02
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568731.1| putative protein; protein id: At5g50570.1, supp... 48 9e-05
gb|AAM13105.1| unknown protein [Arabidopsis thaliana] gi|2213627... 48 9e-05
gb|AAM61173.1| unknown [Arabidopsis thaliana] 46 3e-04
ref|NP_594395.1| hypothetical serine-rich protein. [Schizosaccha... 35 0.57
gb|EAA31137.1| hypothetical protein [Neurospora crassa] 35 0.75
>ref|NP_568731.1| putative protein; protein id: At5g50570.1, supported by cDNA:
113229. [Arabidopsis thaliana]
gi|18423182|ref|NP_568740.1| putative protein; protein
id: At5g50670.1, supported by cDNA: 113229. [Arabidopsis
thaliana] gi|8777390|dbj|BAA96980.1| contains similarity
to squamosa promoter binding protein~gene_id:MFB16.6
[Arabidopsis thaliana] gi|9758766|dbj|BAB09142.1|
contains similarity to squamosa promoter binding
protein~gene_id:MBA10.13 [Arabidopsis thaliana]
gi|26450038|dbj|BAC42139.1| unknown protein [Arabidopsis
thaliana]
Length = 359
Score = 47.8 bits (112), Expect = 9e-05
Identities = 45/130 (34%), Positives = 59/130 (44%), Gaps = 2/130 (1%)
Frame = -3
Query: 524 KQLSFLHNDNPSSTTIDNQLSAASVSHLLLRTSSVQDSPCALSLLSSSYSSQTHAPGNGL 345
KQ FL + S T AS+ + TS + DS CALSLLSSS SS H
Sbjct: 264 KQFPFLQEEESSRT--------ASLCERM--TSCIHDSDCALSLLSSSSSSVPH------ 307
Query: 344 DQMVQPHAMSMSLMEPLGLSLHDNNSSLESMDPVLVHSGSDHCSSMYNMGS--DGSQSNE 171
++QP PL L S E+++ V SG +S + GS G+++
Sbjct: 308 --LLQP---------PLSL-------SQEAVETVFYGSGLFENASAVSDGSVISGNEAVR 349
Query: 170 APQLFPFQWE 141
PQ FPF WE
Sbjct: 350 LPQTFPFHWE 359
>gb|AAM13105.1| unknown protein [Arabidopsis thaliana] gi|22136276|gb|AAM91216.1|
unknown protein [Arabidopsis thaliana]
Length = 177
Score = 47.8 bits (112), Expect = 9e-05
Identities = 45/130 (34%), Positives = 59/130 (44%), Gaps = 2/130 (1%)
Frame = -3
Query: 524 KQLSFLHNDNPSSTTIDNQLSAASVSHLLLRTSSVQDSPCALSLLSSSYSSQTHAPGNGL 345
KQ FL + S T AS+ + TS + DS CALSLLSSS SS H
Sbjct: 82 KQFPFLQEEESSRT--------ASLCERM--TSCIHDSDCALSLLSSSSSSVPH------ 125
Query: 344 DQMVQPHAMSMSLMEPLGLSLHDNNSSLESMDPVLVHSGSDHCSSMYNMGS--DGSQSNE 171
++QP PL L S E+++ V SG +S + GS G+++
Sbjct: 126 --LLQP---------PLSL-------SQEAVETVFYGSGLFENASAVSDGSVISGNEAVR 167
Query: 170 APQLFPFQWE 141
PQ FPF WE
Sbjct: 168 LPQTFPFHWE 177
>gb|AAM61173.1| unknown [Arabidopsis thaliana]
Length = 336
Score = 45.8 bits (107), Expect = 3e-04
Identities = 44/130 (33%), Positives = 58/130 (43%), Gaps = 2/130 (1%)
Frame = -3
Query: 524 KQLSFLHNDNPSSTTIDNQLSAASVSHLLLRTSSVQDSPCALSLLSSSYSSQTHAPGNGL 345
KQ FL + S T AS+ + TS + DS CALSLLSSS SS H
Sbjct: 241 KQFPFLQEEESSRT--------ASLCERM--TSCIHDSDCALSLLSSSSSSVPH------ 284
Query: 344 DQMVQPHAMSMSLMEPLGLSLHDNNSSLESMDPVLVHSGSDHCSSMYNMGS--DGSQSNE 171
++QP PL L S E+++ V SG + + GS G+++
Sbjct: 285 --LLQP---------PLSL-------SQEAVETVFYGSGLFENACAVSDGSVISGNEAVR 326
Query: 170 APQLFPFQWE 141
PQ FPF WE
Sbjct: 327 LPQTFPFHWE 336
>ref|NP_594395.1| hypothetical serine-rich protein. [Schizosaccharomyces pombe]
gi|3915439|sp|O13695|YEN1_SCHPO Hypothetical serine-rich
protein C11G7.01 in chromosome I gi|7492035|pir||T37544
hypothetical serine-rich protein - fission yeast
(Schizosaccharomyces pombe) gi|2408006|emb|CAB16206.1|
hypothetical serine-rich protein. [Schizosaccharomyces
pombe]
Length = 536
Score = 35.0 bits (79), Expect = 0.57
Identities = 33/116 (28%), Positives = 51/116 (43%), Gaps = 2/116 (1%)
Frame = -3
Query: 518 LSFLHNDNPSSTTIDNQLSAASVSHLLLRTSSVQDSPCALSLLSSSYSSQTHAPGNGLDQ 339
+S + +P S++ +++S L+ +SS Q S + SL SSS ++ T +
Sbjct: 57 ISSSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTS 116
Query: 338 MVQPHAMSMSLMEPLGLSLHD--NNSSLESMDPVLVHSGSDHCSSMYNMGSDGSQS 177
HA+S S + S ++SSL V S S H SSM G S S
Sbjct: 117 SSSSHALSSSSSSLVASSSSSGMSSSSLSHSSSVPSSSSSYHSSSMTTSGLSSSAS 172
>gb|EAA31137.1| hypothetical protein [Neurospora crassa]
Length = 938
Score = 34.7 bits (78), Expect = 0.75
Identities = 21/72 (29%), Positives = 34/72 (47%)
Frame = -3
Query: 425 SVQDSPCALSLLSSSYSSQTHAPGNGLDQMVQPHAMSMSLMEPLGLSLHDNNSSLESMDP 246
S +S + ++ S+Y++ T AP G ++ M E L LS +NSS+ P
Sbjct: 708 SKSNSTSSATITPSNYTTNTKAPSLGWGSSLRDKLSRMKEGERLNLSHRPSNSSMRDSTP 767
Query: 245 VLVHSGSDHCSS 210
L +S S S+
Sbjct: 768 ALTNSSSTTAST 779
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,568,647
Number of Sequences: 1393205
Number of extensions: 11559958
Number of successful extensions: 30772
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 29332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30688
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
