Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005138A_C01 KMC005138A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197408.1| putative protein; protein id: At5g19070.1 [Arab... 189 3e-47
dbj|BAC20797.1| contains EST AU173803(R3795)~integral membrane p... 174 6e-43
ref|NP_171825.1| hypothetical protein; protein id: At1g03260.1 [... 147 1e-34
ref|NP_627662.1| putative integral membrane protein [Streptomyce... 76 3e-13
ref|ZP_00073678.1| hypothetical protein [Trichodesmium erythraeu... 75 8e-13
>ref|NP_197408.1| putative protein; protein id: At5g19070.1 [Arabidopsis thaliana]
Length = 262
Score = 189 bits (479), Expect = 3e-47
Identities = 87/111 (78%), Positives = 104/111 (93%)
Frame = +3
Query: 261 MAFSWASALRITLFVLLLAAVVIACFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 440
MAF+W SALRI++ ++L+AA+V+AC+ LPVEK++KDFLLWV+ DLGPWGP LAVAYIPL
Sbjct: 1 MAFTWGSALRISVLLILVAAIVLACYFLPVEKLLKDFLLWVEQDLGPWGPFALAVAYIPL 60
Query: 441 TVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFVV 593
TVLAVPASVLTLGGGYLFGLP+GFVADS+GATLG+GAAF+LGRTIG+ FVV
Sbjct: 61 TVLAVPASVLTLGGGYLFGLPIGFVADSVGATLGSGAAFLLGRTIGKPFVV 111
>dbj|BAC20797.1| contains EST AU173803(R3795)~integral membrane protein-like [Oryza
sativa (japonica cultivar-group)]
Length = 269
Score = 174 bits (442), Expect = 6e-43
Identities = 82/111 (73%), Positives = 100/111 (89%)
Frame = +3
Query: 261 MAFSWASALRITLFVLLLAAVVIACFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPL 440
MA SW SA+R+ + +LLAAV +A FTLPV+K++KDFL+W+ +LGPWGPLVLA+AY+PL
Sbjct: 1 MALSWPSAIRLAVAAVLLAAVGVALFTLPVDKILKDFLVWIKDNLGPWGPLVLALAYVPL 60
Query: 441 TVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFVV 593
TVLAVPAS+LTLGGGYLFGLPVGFVADSIGAT+GA AAF+LGRTIGR +V+
Sbjct: 61 TVLAVPASILTLGGGYLFGLPVGFVADSIGATIGATAAFLLGRTIGRPYVL 111
>ref|NP_171825.1| hypothetical protein; protein id: At1g03260.1 [Arabidopsis
thaliana] gi|25406732|pir||A86164 protein F15K9.14
[imported] - Arabidopsis thaliana
gi|3850582|gb|AAC72122.1| F15K9.14 [Arabidopsis
thaliana]
Length = 269
Score = 147 bits (371), Expect = 1e-34
Identities = 74/104 (71%), Positives = 87/104 (83%)
Frame = +3
Query: 279 SALRITLFVLLLAAVVIACFTLPVEKMMKDFLLWVDHDLGPWGPLVLAVAYIPLTVLAVP 458
S RI + +LLL A+V A LP +KDFLLW+ DLGP+GPL LA+AYIPLT++AVP
Sbjct: 6 STFRIAISLLLLVAIVSAVIFLP---KLKDFLLWIKEDLGPFGPLALALAYIPLTIVAVP 62
Query: 459 ASVLTLGGGYLFGLPVGFVADSIGATLGAGAAFILGRTIGRSFV 590
ASVLTLGGGYLFGLPVGFVADS+GATLGA AAF+LGRTIG+S+V
Sbjct: 63 ASVLTLGGGYLFGLPVGFVADSLGATLGATAAFLLGRTIGKSYV 106
>ref|NP_627662.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|6491820|emb|CAB61866.1| putative integral membrane
protein [Streptomyces coelicolor A3(2)]
Length = 249
Score = 76.3 bits (186), Expect = 3e-13
Identities = 52/135 (38%), Positives = 69/135 (50%)
Frame = +3
Query: 186 SSLKQPSPDFNDDDEECRPWRRRLTMAFSWASALRITLFVLLLAAVVIACFTLPVEKMMK 365
S+ + P P + D+E RP R A+ +R+ V LL A+ + L +++
Sbjct: 9 SATELPPPSTDPDEERRRPAR---------AAWIRLAFLVALLLALG-SWVALGGGDLLR 58
Query: 366 DFLLWVDHDLGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSIGATLGA 545
D WVD LG WGP+V AV Y +P SVLT G LFGL VG A +GAT GA
Sbjct: 59 DVRQWVD-SLGVWGPVVFAVVYALAVTALLPGSVLTASAGALFGLAVGAGAVLVGATAGA 117
Query: 546 GAAFILGRTIGRSFV 590
+F L R +GR V
Sbjct: 118 ALSFGLARWLGRPVV 132
>ref|ZP_00073678.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 242
Score = 74.7 bits (182), Expect = 8e-13
Identities = 36/80 (45%), Positives = 54/80 (67%)
Frame = +3
Query: 351 EKMMKDFLLWVDHDLGPWGPLVLAVAYIPLTVLAVPASVLTLGGGYLFGLPVGFVADSIG 530
++++++ L W+D L PWGP+ YI TVL +P S+LTLG G+LFG G + SIG
Sbjct: 41 QQLLENALNWID-TLSPWGPIAFITIYILATVLFLPGSLLTLGAGFLFGPLFGSIYVSIG 99
Query: 531 ATLGAGAAFILGRTIGRSFV 590
+T+GA AF++GR + R +V
Sbjct: 100 STIGATFAFLVGRYLARGWV 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 534,378,558
Number of Sequences: 1393205
Number of extensions: 12649258
Number of successful extensions: 59199
Number of sequences better than 10.0: 214
Number of HSP's better than 10.0 without gapping: 51882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58507
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
