Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005136A_C01 KMC005136A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191064.1| In2-1 protein, putative; protein id: At3g55040.... 65 3e-10
emb|CAA93826.1| dormancy related protein [Trollius ledebourii] 62 4e-09
gb|AAG34872.1|AF249913_1 In2-1 protein [Glycine max] 61 6e-09
ref|NP_195899.1| In2-1 protein, putative; protein id: At5g02790.... 61 8e-09
gb|AAM61679.1| In2-1 protein [Arabidopsis thaliana] 60 1e-08
>ref|NP_191064.1| In2-1 protein, putative; protein id: At3g55040.1 [Arabidopsis
thaliana] gi|11358031|pir||T47643 hypothetical protein
T15C9.60 - Arabidopsis thaliana
gi|7329634|emb|CAB82699.1| putative protein [Arabidopsis
thaliana]
Length = 292
Score = 65.5 bits (158), Expect = 3e-10
Identities = 31/54 (57%), Positives = 38/54 (69%)
Frame = -2
Query: 487 FIERFQLFLMEVRNYDI*IGRPRLAAWIDGMDNIDGYQVTRSDPKELVESYQKR 326
FIERF+L L +V N DI GRP LA WI M+ I+ Y TR DP+ELVE Y++R
Sbjct: 232 FIERFRLILSDVMNVDITSGRPNLALWIQEMNKIEAYTETRQDPQELVERYKRR 285
>emb|CAA93826.1| dormancy related protein [Trollius ledebourii]
Length = 147
Score = 61.6 bits (148), Expect = 4e-09
Identities = 25/56 (44%), Positives = 42/56 (74%)
Frame = -2
Query: 487 FIERFQLFLMEVRNYDI*IGRPRLAAWIDGMDNIDGYQVTRSDPKELVESYQKRFL 320
F+ERFQ FL+EV+ YD+ +GRP+L W + ++ I+ Y+ T+ D KEL+ ++K++L
Sbjct: 91 FLERFQPFLLEVKGYDVTVGRPKLVKWFEEVNGIESYRQTKWDAKELLALHKKKWL 146
>gb|AAG34872.1|AF249913_1 In2-1 protein [Glycine max]
Length = 237
Score = 61.2 bits (147), Expect = 6e-09
Identities = 26/56 (46%), Positives = 40/56 (71%)
Frame = -2
Query: 487 FIERFQLFLMEVRNYDI*IGRPRLAAWIDGMDNIDGYQVTRSDPKELVESYQKRFL 320
F+ERFQ+ EV +DI GRP+LA W + ++ ++ Y TR DP+E+V+ ++KRFL
Sbjct: 179 FVERFQIVFAEVFKHDITEGRPKLATWFEELNKLNAYTETRVDPQEIVDLFKKRFL 234
>ref|NP_195899.1| In2-1 protein, putative; protein id: At5g02790.1, supported by
cDNA: 13224. [Arabidopsis thaliana]
gi|11357904|pir||T48300 hypothetical protein F9G14.100 -
Arabidopsis thaliana gi|7413554|emb|CAB86033.1| putative
protein [Arabidopsis thaliana]
gi|22655240|gb|AAM98210.1| unknown protein [Arabidopsis
thaliana] gi|25084108|gb|AAN72177.1| unknown protein
[Arabidopsis thaliana]
Length = 235
Score = 60.8 bits (146), Expect = 8e-09
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = -2
Query: 487 FIERFQLFLMEVRNYDI*IGRPRLAAWIDGMDNIDGYQVTRSDPKELVESYQKRFL 320
FIERFQ L E+ DI RP+L+AWI+ ++ DGY T+ DPKE+VE ++K+F+
Sbjct: 180 FIERFQTVLNELFKCDITAERPKLSAWIEEINKSDGYAQTKMDPKEIVEVFKKKFM 235
>gb|AAM61679.1| In2-1 protein [Arabidopsis thaliana]
Length = 235
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = -2
Query: 487 FIERFQLFLMEVRNYDI*IGRPRLAAWIDGMDNIDGYQVTRSDPKELVESYQKRFL 320
FIERFQ L E+ DI RP+L+AWI+ ++ DGY T+ DPKE+VE ++K+F+
Sbjct: 180 FIERFQTVLDELFKCDITAERPKLSAWIEEINKSDGYAQTKMDPKEIVEVFKKKFM 235
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,836,761
Number of Sequences: 1393205
Number of extensions: 8155447
Number of successful extensions: 17437
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17437
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
