Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005135A_C04 KMC005135A_c04
(1202 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloropla... 533 e-160
sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1, chlorop... 507 e-151
sp|P23322|PSBO_LYCES Oxygen-evolving enhancer protein 1, chlorop... 498 e-150
sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chlorop... 502 e-150
dbj|BAA96365.2| oxygen evolving enhancer protein 1 precursor [Br... 510 e-150
>sp|P14226|PSBO_PEA Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33
kDa subunit of oxygen evolving system of photosystem II)
(OEC 33 kDa subunit) (33 kDa thylakoid membrane protein)
gi|81934|pir||S04132 photosystem II oxygen-evolving
complex protein 1 precursor - garden pea
gi|20621|emb|CAA33408.1| precursor (AA -81 to 248) [Pisum
sativum] gi|344004|dbj|BAA02554.1| precursor for 33-kDa
protein of photosystem II [Pisum sativum]
gi|226937|prf||1611461A O2 evolving complex 33kD protein
Length = 329
Score = 533 bits (1374), Expect(2) = e-160
Identities = 266/298 (89%), Positives = 284/298 (95%)
Frame = -2
Query: 1057 RLLGLEPSAAKVSCSLQADFKELAHKCVEATKIAGFALATSALVVSGASAEGAPKRLTFD 878
+ GLE AKV+CSLQ+DFKELAHKCVEA+KIAGFALATSALVVSGASAEGAPKRLTFD
Sbjct: 32 KAFGLEHYGAKVTCSLQSDFKELAHKCVEASKIAGFALATSALVVSGASAEGAPKRLTFD 91
Query: 877 EIQSKTYMEVKGTGTANQCPTIEGGVESFSFKAGKYNAKKFCLEPTSFTVKAEGVAKNAP 698
EIQSKTY+EVKGTGTANQCPTI+GGV+SFSFK GKYNAKK CLEPTSFTVK+EGV KN P
Sbjct: 92 EIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKLCLEPTSFTVKSEGVTKNTP 151
Query: 697 LEFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 518
L FQNTKLMTRLTYTLDEIEGPFEVS+DG+VKFEEKDGIDYAAVTVQLPGGERVPFLFTI
Sbjct: 152 LAFQNTKLMTRLTYTLDEIEGPFEVSADGSVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 211
Query: 517 KPLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDHAVALPAGGRGDEEELAKENH 338
K LVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYD+AVALPAGGRGDEEEL KEN+
Sbjct: 212 KQLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDNAVALPAGGRGDEEELGKENN 271
Query: 337 QSASSSQGKITLSVTPSQPDTGEVIGVFESIQPSDTDLGAKAPKDVKIPGVWYAQLES 164
+SA+SS+GKITLSVT ++P+TGEVIGVFESIQPSDTDLGAKAPKDVKI GVWYAQLES
Sbjct: 272 KSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES 329
Score = 56.6 bits (135), Expect(2) = e-160
Identities = 30/37 (81%), Positives = 33/37 (89%)
Frame = -1
Query: 1154 MAASLQAAATFMQPTKFGRTNTLQLKSTQSISKAFGV 1044
MAASLQAAAT MQPTK R+NTLQLKS QS+SKAFG+
Sbjct: 1 MAASLQAAATLMQPTKL-RSNTLQLKSNQSVSKAFGL 36
>sp|Q40459|PSBO_TOBAC Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33
kDa subunit of oxygen evolving system of photosystem II)
(OEC 33 kDa subunit) (33 kDa thylakoid membrane protein)
gi|7489173|pir||T02066 photosystem II oxygen-evolving
complex protein 1 precursor - common tobacco
gi|505482|emb|CAA45701.1| 33 kDa polypeptide of
water-oxidizing complex of photosystem II [Nicotiana
tabacum]
Length = 332
Score = 507 bits (1306), Expect(2) = e-151
Identities = 252/297 (84%), Positives = 273/297 (91%)
Frame = -2
Query: 1057 RLLGLEPSAAKVSCSLQADFKELAHKCVEATKIAGFALATSALVVSGASAEGAPKRLTFD 878
+ G+EP+AA+++CSLQ + K+LA K +A K+AGFALATSALVVSGA+AEG PKRLTFD
Sbjct: 36 KAFGVEPAAARLTCSLQTELKDLAQKFTDAAKVAGFALATSALVVSGANAEGVPKRLTFD 95
Query: 877 EIQSKTYMEVKGTGTANQCPTIEGGVESFSFKAGKYNAKKFCLEPTSFTVKAEGVAKNAP 698
EIQSKTYMEVKGTGTANQCPTI+GGV SF+FK GKYNAKKFCLEPTSFTVKAE V KNAP
Sbjct: 96 EIQSKTYMEVKGTGTANQCPTIDGGVASFAFKPGKYNAKKFCLEPTSFTVKAESVNKNAP 155
Query: 697 LEFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 518
+FQ TKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI
Sbjct: 156 PDFQKTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 215
Query: 517 KPLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDHAVALPAGGRGDEEELAKENH 338
K LVASGKP+SFSGEFLVPSYRGSSFLDPKGRG STGYD+AVALPAGGRGDEEEL KEN
Sbjct: 216 KQLVASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENV 275
Query: 337 QSASSSQGKITLSVTPSQPDTGEVIGVFESIQPSDTDLGAKAPKDVKIPGVWYAQLE 167
++ SSS GKITLSVT S+P+TGEVIGVFESIQPSDTDLGAK PKDVKI G+WYAQLE
Sbjct: 276 KNTSSSTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 332
Score = 52.8 bits (125), Expect(2) = e-151
Identities = 29/40 (72%), Positives = 31/40 (77%), Gaps = 3/40 (7%)
Frame = -1
Query: 1154 MAASLQAAATFMQPTKFG---RTNTLQLKSTQSISKAFGV 1044
MAASLQAAAT MQPTK G N LQL+S QS+SKAFGV
Sbjct: 1 MAASLQAAATLMQPTKVGVAPARNNLQLRSAQSVSKAFGV 40
>sp|P23322|PSBO_LYCES Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33
kDa subunit of oxygen evolving system of photosystem II)
(OEC 33 kDa subunit) (33 kDa thylakoid membrane protein)
gi|7489040|pir||T06368 photosystem II oxygen-evolving
complex protein 1 precursor - tomato
gi|19157|emb|CAA78043.1| 33kDa precursor protein of
oxygen-evolving complex [Lycopersicon esculentum]
gi|738944|prf||2001459A O2 evolving protein
complex:SUBUNIT=33kD
Length = 329
Score = 498 bits (1282), Expect(2) = e-150
Identities = 247/297 (83%), Positives = 269/297 (90%)
Frame = -2
Query: 1057 RLLGLEPSAAKVSCSLQADFKELAHKCVEATKIAGFALATSALVVSGASAEGAPKRLTFD 878
+ G+E + +++CSLQ + KELA KC +A KIAGFALATSALVVSGA+AEG PKRLT+D
Sbjct: 33 KAFGVEQGSGRLTCSLQTEIKELAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTYD 92
Query: 877 EIQSKTYMEVKGTGTANQCPTIEGGVESFSFKAGKYNAKKFCLEPTSFTVKAEGVAKNAP 698
EIQSKTYMEVKGTGTANQCPTIEGGV SF+FK GKY AKKFCLEPTSFTVKAEGV+KN+
Sbjct: 93 EIQSKTYMEVKGTGTANQCPTIEGGVGSFAFKPGKYTAKKFCLEPTSFTVKAEGVSKNSA 152
Query: 697 LEFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 518
+FQ TKLMTRLTYTLDEIEGPFEVS DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI
Sbjct: 153 PDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 212
Query: 517 KPLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDHAVALPAGGRGDEEELAKENH 338
K LVASGKP+SFSGEFLVPSYRGSSFLDPKGRG STGYD+AVALPAGGRGDEEEL KEN
Sbjct: 213 KQLVASGKPESFSGEFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENV 272
Query: 337 QSASSSQGKITLSVTPSQPDTGEVIGVFESIQPSDTDLGAKAPKDVKIPGVWYAQLE 167
++ +S GKITLSVT S+P+TGEVIGVFESIQPSDTDLGAK PKDVKI G+WYAQLE
Sbjct: 273 KNTASLTGKITLSVTQSKPETGEVIGVFESIQPSDTDLGAKVPKDVKIQGIWYAQLE 329
Score = 57.4 bits (137), Expect(2) = e-150
Identities = 29/37 (78%), Positives = 31/37 (83%)
Frame = -1
Query: 1154 MAASLQAAATFMQPTKFGRTNTLQLKSTQSISKAFGV 1044
MAASLQAAAT MQPTK G N LQL+S QS+SKAFGV
Sbjct: 1 MAASLQAAATLMQPTKVGVRNNLQLRSAQSVSKAFGV 37
>sp|P26320|PSBO_SOLTU Oxygen-evolving enhancer protein 1, chloroplast precursor (OEE1) (33
kDa subunit of oxygen evolving system of photosystem II)
(OEC 33 kDa subunit) (33 kDa thylakoid membrane protein)
Length = 333
Score = 502 bits (1293), Expect(2) = e-150
Identities = 249/298 (83%), Positives = 270/298 (90%)
Frame = -2
Query: 1057 RLLGLEPSAAKVSCSLQADFKELAHKCVEATKIAGFALATSALVVSGASAEGAPKRLTFD 878
+ GLEPSA+++SCSLQ D K+ A KC +A KIAGFALATSALVVSGA+AEG PKRLTFD
Sbjct: 36 KAFGLEPSASRLSCSLQTDLKDFAQKCTDAAKIAGFALATSALVVSGANAEGVPKRLTFD 95
Query: 877 EIQSKTYMEVKGTGTANQCPTIEGGVESFSFKAGKYNAKKFCLEPTSFTVKAEGVAKNAP 698
EIQSKTYMEVKGTGTANQCPTI+GGV+SF+FK GKYNAKKFCLEPTSFTVKAEGV+KN+
Sbjct: 96 EIQSKTYMEVKGTGTANQCPTIDGGVDSFAFKPGKYNAKKFCLEPTSFTVKAEGVSKNSA 155
Query: 697 LEFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 518
+FQ TKLMTRLTYTLDEIEGPFEVS DGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI
Sbjct: 156 PDFQKTKLMTRLTYTLDEIEGPFEVSPDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 215
Query: 517 KPLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDHAVALPAGGRGDEEELAKENH 338
K LVASGKP+SFS +FLVPSYRGSSFLDPKGRG STGYD+AVALPAGGRGDEEEL KEN
Sbjct: 216 KQLVASGKPESFSVDFLVPSYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELQKENV 275
Query: 337 QSASSSQGKITLSVTPSQPDTGEVIGVFESIQPSDTDLGAKAPKDVKIPGVWYAQLES 164
++ +S GKIT +VT S P TGEVIGVFESIQPSDTDLGAK PKDVKI G+WYAQLES
Sbjct: 276 KNTASLTGKITFTVTKSNPQTGEVIGVFESIQPSDTDLGAKTPKDVKIQGIWYAQLES 333
Score = 52.0 bits (123), Expect(2) = e-150
Identities = 28/40 (70%), Positives = 32/40 (80%), Gaps = 3/40 (7%)
Frame = -1
Query: 1154 MAASLQAAATFMQPTKFG---RTNTLQLKSTQSISKAFGV 1044
MAASLQAAAT MQPTK G N LQL+S+QS+SKAFG+
Sbjct: 1 MAASLQAAATLMQPTKVGGVSARNNLQLRSSQSVSKAFGL 40
>dbj|BAA96365.2| oxygen evolving enhancer protein 1 precursor [Bruguiera gymnorrhiza]
Length = 332
Score = 510 bits (1313), Expect(2) = e-150
Identities = 251/298 (84%), Positives = 273/298 (91%)
Frame = -2
Query: 1057 RLLGLEPSAAKVSCSLQADFKELAHKCVEATKIAGFALATSALVVSGASAEGAPKRLTFD 878
R GLEP+AA+++CS Q DFK+LA KCV+ATKIAGFALATSALVVSGA AEG PKRLT+D
Sbjct: 35 RAFGLEPAAARITCSSQTDFKDLAQKCVDATKIAGFALATSALVVSGAGAEGVPKRLTYD 94
Query: 877 EIQSKTYMEVKGTGTANQCPTIEGGVESFSFKAGKYNAKKFCLEPTSFTVKAEGVAKNAP 698
EIQSKTY+EVKGTGTANQCPTIEGGV+SF+FK GKYN KK CLEPTSFTVKAEGV KNAP
Sbjct: 95 EIQSKTYLEVKGTGTANQCPTIEGGVDSFAFKPGKYNVKKLCLEPTSFTVKAEGVNKNAP 154
Query: 697 LEFQNTKLMTRLTYTLDEIEGPFEVSSDGTVKFEEKDGIDYAAVTVQLPGGERVPFLFTI 518
EFQNTKLMTRLTYTLDEIEGPFEVS DGTVKF EKDGIDYAAVTVQLPGGERVPFLFT+
Sbjct: 155 PEFQNTKLMTRLTYTLDEIEGPFEVSPDGTVKFVEKDGIDYAAVTVQLPGGERVPFLFTV 214
Query: 517 KPLVASGKPDSFSGEFLVPSYRGSSFLDPKGRGASTGYDHAVALPAGGRGDEEELAKENH 338
K LVA+GKP+SFSGE+LVPSYRGSSFLDPKGRG STGY +AVALPAGGRGDEEEL KEN
Sbjct: 215 KQLVATGKPESFSGEYLVPSYRGSSFLDPKGRGGSTGYXNAVALPAGGRGDEEELTKENI 274
Query: 337 QSASSSQGKITLSVTPSQPDTGEVIGVFESIQPSDTDLGAKAPKDVKIPGVWYAQLES 164
++ SSS GKITL VT S+P+TGEVIGVFES+QPSDTDLGAK PKDVKI G+WYAQL+S
Sbjct: 275 KNTSSSTGKITLGVTKSKPETGEVIGVFESLQPSDTDLGAKVPKDVKIQGIWYAQLDS 332
Score = 44.3 bits (103), Expect(2) = e-150
Identities = 26/40 (65%), Positives = 31/40 (77%), Gaps = 3/40 (7%)
Frame = -1
Query: 1154 MAASLQAAATFMQPTKFG---RTNTLQLKSTQSISKAFGV 1044
MAASLQAAAT MQP K G RT LQL+S+Q +S+AFG+
Sbjct: 1 MAASLQAAATLMQPAKVGVPSRTG-LQLRSSQIVSRAFGL 39
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,131,144,127
Number of Sequences: 1393205
Number of extensions: 28165145
Number of successful extensions: 98706
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 89495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98357
length of database: 448,689,247
effective HSP length: 126
effective length of database: 273,145,417
effective search space used: 74841844258
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
