Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005134A_C01 KMC005134A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL50074.1| AT3g25150/MJL12_9 [Arabidopsis thaliana] gi|21360... 144 6e-34
ref|NP_189151.1| NTF2-containing RNA-binding protein, putative; ... 144 6e-34
dbj|BAB02073.1| RNA-binding protein-like [Arabidopsis thaliana] 139 1e-32
dbj|BAB10647.1| contains similarity to RNA-binding protein~gene_... 119 2e-26
ref|NP_200906.1| NTF2-containing RNA-binding protein, putative; ... 119 2e-26
>gb|AAL50074.1| AT3g25150/MJL12_9 [Arabidopsis thaliana] gi|21360395|gb|AAM47313.1|
AT3g25150/MJL12_9 [Arabidopsis thaliana]
Length = 488
Score = 144 bits (362), Expect = 6e-34
Identities = 66/105 (62%), Positives = 86/105 (81%)
Frame = +2
Query: 158 QQATVKTPAADIVGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDI 337
QQ D+VGNAFV QYYH+LH+SPE VHRFYQE+SKLGRPE+NGLM IT+T+ I
Sbjct: 7 QQVPAAACTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAI 66
Query: 338 NKKILSLGYDELSAEIISVDAQESYGGGVLVLVTGFMIGKDAIKK 472
+KKI++LGY +SAEI +VD QES+GGG +VLVTG++ GKD++++
Sbjct: 67 DKKIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRR 111
>ref|NP_189151.1| NTF2-containing RNA-binding protein, putative; protein id:
At3g25150.1 [Arabidopsis thaliana]
Length = 486
Score = 144 bits (362), Expect = 6e-34
Identities = 66/105 (62%), Positives = 86/105 (81%)
Frame = +2
Query: 158 QQATVKTPAADIVGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDI 337
QQ D+VGNAFV QYYH+LH+SPE VHRFYQE+SKLGRPE+NGLM IT+T+ I
Sbjct: 7 QQVPAAACTPDMVGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAI 66
Query: 338 NKKILSLGYDELSAEIISVDAQESYGGGVLVLVTGFMIGKDAIKK 472
+KKI++LGY +SAEI +VD QES+GGG +VLVTG++ GKD++++
Sbjct: 67 DKKIMALGYGVISAEIATVDTQESHGGGYIVLVTGYLTGKDSVRR 111
>dbj|BAB02073.1| RNA-binding protein-like [Arabidopsis thaliana]
Length = 473
Score = 139 bits (351), Expect = 1e-32
Identities = 63/93 (67%), Positives = 82/93 (87%)
Frame = +2
Query: 194 VGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDINKKILSLGYDEL 373
VGNAFV QYYH+LH+SPE VHRFYQE+SKLGRPE+NGLM IT+T+ I+KKI++LGY +
Sbjct: 4 VGNAFVPQYYHILHQSPEHVHRFYQEISKLGRPEENGLMSITSTLQAIDKKIMALGYGVI 63
Query: 374 SAEIISVDAQESYGGGVLVLVTGFMIGKDAIKK 472
SAEI +VD QES+GGG +VLVTG++ GKD++++
Sbjct: 64 SAEIATVDTQESHGGGYIVLVTGYLTGKDSVRR 96
>dbj|BAB10647.1| contains similarity to RNA-binding protein~gene_id:MSL3.12
[Arabidopsis thaliana] gi|17063173|gb|AAL32982.1|
AT5g60980/MSL3_100 [Arabidopsis thaliana]
gi|27764908|gb|AAO23575.1| At5g60980/MSL3_100
[Arabidopsis thaliana]
Length = 460
Score = 119 bits (298), Expect = 2e-26
Identities = 59/106 (55%), Positives = 77/106 (71%)
Frame = +2
Query: 158 QQATVKTPAADIVGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDI 337
QQ +P A++VG AFV+QYYH+LH+SP LVHRFYQ+ S L RP+ G + TTM I
Sbjct: 3 QQEASPSPGAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAI 62
Query: 338 NKKILSLGYDELSAEIISVDAQESYGGGVLVLVTGFMIGKDAIKKK 475
N KILSL Y++ +AEI + DAQES+ GV+VLVTG + G D ++KK
Sbjct: 63 NDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKK 108
>ref|NP_200906.1| NTF2-containing RNA-binding protein, putative; protein id:
At5g60980.1, supported by cDNA: 150047. [Arabidopsis
thaliana]
Length = 459
Score = 119 bits (298), Expect = 2e-26
Identities = 59/106 (55%), Positives = 77/106 (71%)
Frame = +2
Query: 158 QQATVKTPAADIVGNAFVDQYYHMLHESPELVHRFYQEVSKLGRPEQNGLMGITTTMLDI 337
QQ +P A++VG AFV+QYYH+LH+SP LVHRFYQ+ S L RP+ G + TTM I
Sbjct: 3 QQEASPSPGAEVVGRAFVEQYYHILHQSPGLVHRFYQDSSFLTRPDVTGAVTTVTTMQAI 62
Query: 338 NKKILSLGYDELSAEIISVDAQESYGGGVLVLVTGFMIGKDAIKKK 475
N KILSL Y++ +AEI + DAQES+ GV+VLVTG + G D ++KK
Sbjct: 63 NDKILSLKYEDYTAEIETADAQESHERGVIVLVTGRLTGNDNVRKK 108
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,418,230
Number of Sequences: 1393205
Number of extensions: 9750151
Number of successful extensions: 29185
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 27629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29134
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
