Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005132A_C01 KMC005132A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65990.1| unknown [Arabidopsis thaliana] 162 3e-39
ref|NP_197476.1| putative protein; protein id: At5g19750.1, supp... 162 3e-39
gb|AAL25565.1| AT5g19750/T29J13_170 [Arabidopsis thaliana] gi|24... 162 3e-39
ref|NP_013352.1| stress-induced yeast MPV17 homolog; Sym1p [Sacc... 78 6e-14
gb|EAA34618.1| hypothetical protein [Neurospora crassa] 71 8e-12
>gb|AAM65990.1| unknown [Arabidopsis thaliana]
Length = 289
Score = 162 bits (410), Expect = 3e-39
Identities = 71/99 (71%), Positives = 91/99 (91%)
Frame = -1
Query: 557 GASGAILRLVIDQFIFSPIFIGVFLASLVTLEGSPSLVVPKLKQEWFSSVLANWKLWIPF 378
G SGA++RL++DQF+F+PIF+GVFL+++VTLEG PS V+PKL+QEW +++ANW+LWIPF
Sbjct: 191 GLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNVIPKLQQEWTGAMIANWQLWIPF 250
Query: 377 QFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVLQK 261
QFLNFRFVPQ +QVLA+NV+AL WNVILSFKAHKEV+ K
Sbjct: 251 QFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK 289
>ref|NP_197476.1| putative protein; protein id: At5g19750.1, supported by cDNA:
6789., supported by cDNA: gi_16648745 [Arabidopsis
thaliana]
Length = 288
Score = 162 bits (410), Expect = 3e-39
Identities = 71/99 (71%), Positives = 91/99 (91%)
Frame = -1
Query: 557 GASGAILRLVIDQFIFSPIFIGVFLASLVTLEGSPSLVVPKLKQEWFSSVLANWKLWIPF 378
G SGA++RL++DQF+F+PIF+GVFL+++VTLEG PS V+PKL+QEW +++ANW+LWIPF
Sbjct: 190 GLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNVIPKLQQEWTGAMIANWQLWIPF 249
Query: 377 QFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVLQK 261
QFLNFRFVPQ +QVLA+NV+AL WNVILSFKAHKEV+ K
Sbjct: 250 QFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK 288
>gb|AAL25565.1| AT5g19750/T29J13_170 [Arabidopsis thaliana]
gi|24111335|gb|AAN46791.1| At5g19750/T29J13_170
[Arabidopsis thaliana]
Length = 288
Score = 162 bits (410), Expect = 3e-39
Identities = 71/99 (71%), Positives = 91/99 (91%)
Frame = -1
Query: 557 GASGAILRLVIDQFIFSPIFIGVFLASLVTLEGSPSLVVPKLKQEWFSSVLANWKLWIPF 378
G SGA++RL++DQF+F+PIF+GVFL+++VTLEG PS V+PKL+QEW +++ANW+LWIPF
Sbjct: 190 GLSGAVIRLLLDQFVFAPIFVGVFLSAVVTLEGKPSNVIPKLQQEWTGAMIANWQLWIPF 249
Query: 377 QFLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVLQK 261
QFLNFRFVPQ +QVLA+NV+AL WNVILSFKAHKEV+ K
Sbjct: 250 QFLNFRFVPQNYQVLASNVVALAWNVILSFKAHKEVVAK 288
>ref|NP_013352.1| stress-induced yeast MPV17 homolog; Sym1p [Saccharomyces
cerevisiae] gi|1363740|pir||S59397 probable membrane
protein YLR251w - yeast (Saccharomyces cerevisiae)
gi|662333|gb|AAB67389.1| Ylr251wp [Saccharomyces
cerevisiae]
Length = 197
Score = 78.2 bits (191), Expect = 6e-14
Identities = 36/98 (36%), Positives = 63/98 (63%), Gaps = 1/98 (1%)
Frame = -1
Query: 551 SGAILRLVIDQFIFSPIFIGVFLASLVTLEG-SPSLVVPKLKQEWFSSVLANWKLWIPFQ 375
S +LR+ +DQ F+P+ + + + +EG S + K+K++W+ ++L NW +W FQ
Sbjct: 89 SNMVLRVAVDQLAFAPLGLPFYFTCMSIMEGRSFDVAKLKIKEQWWPTLLTNWAVWPLFQ 148
Query: 374 FLNFRFVPQQFQVLAANVIALVWNVILSFKAHKEVLQK 261
+NF VP Q ++LA NV+A+ WN LS+K + +V++K
Sbjct: 149 AINFSVVPLQHRLLAVNVVAIFWNTYLSYK-NSKVMEK 185
>gb|EAA34618.1| hypothetical protein [Neurospora crassa]
Length = 190
Score = 71.2 bits (173), Expect = 8e-12
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = -1
Query: 542 ILRLVIDQFIFSPIFIGVFLASLVTLEGSPSLVVPKLKQEWFSSVLANWKLWIPFQFLNF 363
+ R+ DQ +F+P FIG+FL S+ LEG+ V KL++ ++ ++ NW +W Q +NF
Sbjct: 86 LARVAADQGLFAPTFIGIFLGSMAVLEGTD--VKEKLQKNYWEALSTNWMVWPFVQMVNF 143
Query: 362 RFVPQQFQVLAANVIALVWNVILSF 288
+ VP +VL NVI++ WN LS+
Sbjct: 144 KVVPLDHRVLFVNVISIGWNCYLSW 168
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,698,071
Number of Sequences: 1393205
Number of extensions: 8664069
Number of successful extensions: 18377
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 17924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18352
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
