Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005131A_C01 KMC005131A_c01
(731 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK31146.1|AF345342_1 unknown [Arabidopsis thaliana] gi|26983... 164 1e-39
gb|AAL38841.2| unknown protein [Arabidopsis thaliana] 120 3e-26
pir||T06093 hypothetical protein T5J17.40 - Arabidopsis thaliana... 120 3e-26
ref|NP_195697.2| putative protein; protein id: At4g39870.1, supp... 120 3e-26
gb|AAN86157.1| unknown protein [Arabidopsis thaliana] 120 3e-26
>gb|AAK31146.1|AF345342_1 unknown [Arabidopsis thaliana] gi|26983854|gb|AAN86179.1| unknown
protein [Arabidopsis thaliana]
Length = 303
Score = 164 bits (415), Expect = 1e-39
Identities = 73/92 (79%), Positives = 82/92 (88%)
Frame = -1
Query: 728 KRKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCLNDLLGVGGGGNFALCLDEDLLTGT 549
KRKYQGT+Q+F+FTTIYG+PR+FRPTGANRYY MC+N+ L GGGGNFALCLDEDLL T
Sbjct: 208 KRKYQGTSQTFLFTTIYGEPRIFRPTGANRYYLMCMNEFLAFGGGGNFALCLDEDLLKAT 267
Query: 548 SGPCDTFGNKCLAHSPEFELKNVELWGFTHAS 453
SGP +TFGN+CLA S EFELKNVELWGF HAS
Sbjct: 268 SGPSETFGNECLASSTEFELKNVELWGFAHAS 299
>gb|AAL38841.2| unknown protein [Arabidopsis thaliana]
Length = 389
Score = 120 bits (300), Expect = 3e-26
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 725 RKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCLNDLLGVGGGGNFALCLDEDLLTGTS 546
+KYQGTN +FVFT GQP ++RPTGANR+Y +C + L +GGGG FAL LD +LL+G+S
Sbjct: 279 KKYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSS 338
Query: 545 GPCDTFGNKCLAHSPEFELKNVELWGFTHAS 453
+T+GN CLA S +F++K VELWGF + S
Sbjct: 339 AYSETYGNSCLADSQDFDVKEVELWGFVYGS 369
>pir||T06093 hypothetical protein T5J17.40 - Arabidopsis thaliana
gi|4490738|emb|CAB38900.1| putative protein [Arabidopsis
thaliana] gi|7271042|emb|CAB80650.1| putative protein
[Arabidopsis thaliana]
Length = 368
Score = 120 bits (300), Expect = 3e-26
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 725 RKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCLNDLLGVGGGGNFALCLDEDLLTGTS 546
+KYQGTN +FVFT GQP ++RPTGANR+Y +C + L +GGGG FAL LD +LL+G+S
Sbjct: 258 KKYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSS 317
Query: 545 GPCDTFGNKCLAHSPEFELKNVELWGFTHAS 453
+T+GN CLA S +F++K VELWGF + S
Sbjct: 318 AYSETYGNSCLADSQDFDVKEVELWGFVYGS 348
>ref|NP_195697.2| putative protein; protein id: At4g39870.1, supported by cDNA:
gi_17529227 [Arabidopsis thaliana]
Length = 271
Score = 120 bits (300), Expect = 3e-26
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 725 RKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCLNDLLGVGGGGNFALCLDEDLLTGTS 546
+KYQGTN +FVFT GQP ++RPTGANR+Y +C + L +GGGG FAL LD +LL+G+S
Sbjct: 161 KKYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSS 220
Query: 545 GPCDTFGNKCLAHSPEFELKNVELWGFTHAS 453
+T+GN CLA S +F++K VELWGF + S
Sbjct: 221 AYSETYGNSCLADSQDFDVKEVELWGFVYGS 251
>gb|AAN86157.1| unknown protein [Arabidopsis thaliana]
Length = 394
Score = 120 bits (300), Expect = 3e-26
Identities = 52/91 (57%), Positives = 69/91 (75%)
Frame = -1
Query: 725 RKYQGTNQSFVFTTIYGQPRLFRPTGANRYYYMCLNDLLGVGGGGNFALCLDEDLLTGTS 546
+KYQGTN +FVFT GQP ++RPTGANR+Y +C + L +GGGG FAL LD +LL+G+S
Sbjct: 284 KKYQGTNSTFVFTNKSGQPTIYRPTGANRFYTLCSKEFLALGGGGRFALYLDSELLSGSS 343
Query: 545 GPCDTFGNKCLAHSPEFELKNVELWGFTHAS 453
+T+GN CLA S +F++K VELWGF + S
Sbjct: 344 AYSETYGNSCLADSQDFDVKEVELWGFVYGS 374
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,803,367
Number of Sequences: 1393205
Number of extensions: 12735386
Number of successful extensions: 46340
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 36846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43842
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
