Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005128A_C01 KMC005128A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P46280|EFT2_SOYBN ELONGATION FACTOR TU, CHLOROPLAST PRECURSOR... 144 5e-34
sp|Q43467|EFT1_SOYBN Elongation factor Tu, chloroplast precursor... 144 7e-34
emb|CAA75381.1| translation elongation factor-TU [Glycine max] 143 9e-34
emb|CAA75382.1| translation elongation factor-TU [Glycine max] 140 6e-33
gb|AAN31832.1| putative chloroplast translation elongation facto... 140 8e-33
>sp|P46280|EFT2_SOYBN ELONGATION FACTOR TU, CHLOROPLAST PRECURSOR (EF-TU)
gi|2119915|pir||S60659 translation elongation factor
EF-Tu precursor, chloroplast - soybean
gi|949873|emb|CAA61444.1| EF-Tu protein [Glycine max]
Length = 479
Score = 144 bits (363), Expect = 5e-34
Identities = 71/75 (94%), Positives = 73/75 (96%)
Frame = -2
Query: 495 AGYSPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 316
+GY PQFYMRTTDVTGKVT IMNDKDEESKMVMPGDRVK+VVELIVPVACEQGMRFAIRE
Sbjct: 405 SGYRPQFYMRTTDVTGKVTEIMNDKDEESKMVMPGDRVKLVVELIVPVACEQGMRFAIRE 464
Query: 315 GGKTVGAGVIQSIIE 271
GGKTVGAGVIQSIIE
Sbjct: 465 GGKTVGAGVIQSIIE 479
>sp|Q43467|EFT1_SOYBN Elongation factor Tu, chloroplast precursor (EF-Tu)
gi|99903|pir||S21567 translation elongation factor EF-Tu
precursor - soybean chloroplast gi|18776|emb|CAA46864.1|
EF-Tu [Glycine max] gi|448921|prf||1918220A elongation
factor Tu
Length = 479
Score = 144 bits (362), Expect = 7e-34
Identities = 71/75 (94%), Positives = 73/75 (96%)
Frame = -2
Query: 495 AGYSPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 316
AGY PQFYMRTTDVTGKVT+IMNDKDEES MV+PGDRVKMVVELIVPVACEQGMRFAIRE
Sbjct: 405 AGYRPQFYMRTTDVTGKVTSIMNDKDEESTMVLPGDRVKMVVELIVPVACEQGMRFAIRE 464
Query: 315 GGKTVGAGVIQSIIE 271
GGKTVGAGVIQSIIE
Sbjct: 465 GGKTVGAGVIQSIIE 479
>emb|CAA75381.1| translation elongation factor-TU [Glycine max]
Length = 248
Score = 143 bits (361), Expect = 9e-34
Identities = 71/75 (94%), Positives = 73/75 (96%)
Frame = -2
Query: 495 AGYSPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 316
AGY PQFYMRTTDVTGKVTAI ND+DEES+MVMPGDRVKMVVELIVPVACEQGMRFAIRE
Sbjct: 174 AGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGDRVKMVVELIVPVACEQGMRFAIRE 233
Query: 315 GGKTVGAGVIQSIIE 271
GGKTVGAGVIQSIIE
Sbjct: 234 GGKTVGAGVIQSIIE 248
>emb|CAA75382.1| translation elongation factor-TU [Glycine max]
Length = 346
Score = 140 bits (354), Expect = 6e-33
Identities = 70/75 (93%), Positives = 72/75 (95%)
Frame = -2
Query: 495 AGYSPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 316
AGY PQFYMRTTDVTGKVTAI ND+DEES+MVMPG RVKMVVELIVPVACEQGMRFAIRE
Sbjct: 272 AGYRPQFYMRTTDVTGKVTAITNDRDEESQMVMPGXRVKMVVELIVPVACEQGMRFAIRE 331
Query: 315 GGKTVGAGVIQSIIE 271
GGKTVGAGVIQSIIE
Sbjct: 332 GGKTVGAGVIQSIIE 346
>gb|AAN31832.1| putative chloroplast translation elongation factor EF-Tu precursor
[Arabidopsis thaliana]
Length = 476
Score = 140 bits (353), Expect = 8e-33
Identities = 69/75 (92%), Positives = 72/75 (96%)
Frame = -2
Query: 495 AGYSPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIRE 316
AGY PQFYMRTTDVTGKVT IMNDKDEESKMVMPGDRVK+VVELIVPVACEQGMRFAIRE
Sbjct: 402 AGYRPQFYMRTTDVTGKVTKIMNDKDEESKMVMPGDRVKIVVELIVPVACEQGMRFAIRE 461
Query: 315 GGKTVGAGVIQSIIE 271
GGKTVGAGVI +I+E
Sbjct: 462 GGKTVGAGVIGTILE 476
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,919,431
Number of Sequences: 1393205
Number of extensions: 8847050
Number of successful extensions: 25662
Number of sequences better than 10.0: 517
Number of HSP's better than 10.0 without gapping: 24018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25128
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
