Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005124A_C01 KMC005124A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_209873.1| similar to hypothetical protein [Plasmodium fal... 36 0.31
ref|NP_404591.1| putative OmpA-family membrane protein [Yersinia... 34 0.91
ref|NP_405057.1| putative exported protein [Yersinia pestis] gi|... 34 0.91
gb|AAD55979.1|AF159296_1 extensin-like protein [Lycopersicon esc... 34 1.2
gb|AAM18730.1|AC092548_8 hypothetical protein [Oryza sativa (jap... 34 1.2
>ref|XP_209873.1| similar to hypothetical protein [Plasmodium falciparum 3D7] [Homo
sapiens]
Length = 169
Score = 35.8 bits (81), Expect = 0.31
Identities = 25/66 (37%), Positives = 32/66 (47%)
Frame = -3
Query: 520 PLKLRKYPFCLFTSLLSPLLSASPS*YPATRAAAASNPCSSLPQSPPIYHPSFLLWILSP 341
P L P L T L S +PS +P T A+ +P + L PP HPS + SP
Sbjct: 59 PTHLSNQPTVLCTQLSSTYPPTNPSVHPLTHASI--HPFTHLTIYPPT-HPSIYPFNPSP 115
Query: 340 TYPFHH 323
T+PF H
Sbjct: 116 THPFLH 121
>ref|NP_404591.1| putative OmpA-family membrane protein [Yersinia pestis]
gi|22126581|ref|NP_670004.1| hypothetical [Yersinia
pestis KIM] gi|22127241|ref|NP_670664.1| hypothetical
[Yersinia pestis KIM] gi|25509990|pir||AG0119 probable
OmpA-family membrane protein YPO0974 [imported] -
Yersinia pestis (strain CO92)
gi|15979044|emb|CAC89818.1| putative OmpA-family
membrane protein [Yersinia pestis CO92]
gi|21959587|gb|AAM86255.1|AE013873_3 hypothetical
[Yersinia pestis KIM]
gi|21960312|gb|AAM86915.1|AE013938_3 hypothetical
[Yersinia pestis KIM]
Length = 578
Score = 34.3 bits (77), Expect = 0.91
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -1
Query: 456 PLLASIQRHAPPPPPTPAP 400
PLLA+I+ + PPPPP PAP
Sbjct: 416 PLLAAIKSYIPPPPPPPAP 434
>ref|NP_405057.1| putative exported protein [Yersinia pestis] gi|25510244|pir||AC0179
probable exported protein YPO1469 [imported] - Yersinia
pestis (strain CO92) gi|15979513|emb|CAC90294.1|
putative exported protein [Yersinia pestis CO92]
Length = 578
Score = 34.3 bits (77), Expect = 0.91
Identities = 13/19 (68%), Positives = 16/19 (83%)
Frame = -1
Query: 456 PLLASIQRHAPPPPPTPAP 400
PLLA+I+ + PPPPP PAP
Sbjct: 416 PLLAAIKSYIPPPPPPPAP 434
>gb|AAD55979.1|AF159296_1 extensin-like protein [Lycopersicon esculentum]
Length = 711
Score = 33.9 bits (76), Expect = 1.2
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -1
Query: 492 VFSLPFFLLYSQPLLASIQRHAPPPPPT----PAPAFHSLLLSIILHSFYGSSPPP 337
V S P L++S P H+PPPP P P F + L L S Y S PPP
Sbjct: 655 VASPPPALVFSPPPPV----HSPPPPAPVMSPPPPTFEDVALPPTLGSLYASPPPP 706
>gb|AAM18730.1|AC092548_8 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 729
Score = 33.9 bits (76), Expect = 1.2
Identities = 29/78 (37%), Positives = 36/78 (45%)
Frame = -1
Query: 486 SLPFFLLYSQPLLASIQRHAPPPPPTPAPAFHSLLLSIILHSFYGSSPPPTHFTIRSM*I 307
SL FL + PL S APPPPP + H LL S++ S PPP F + +
Sbjct: 264 SLSRFLPHLTPLRLSHLILAPPPPPRHDDSGHLLLASLL-----PSPPPPLPFAL----L 314
Query: 306 LHILEEPSKVEASTKCLL 253
LH L P + A LL
Sbjct: 315 LHSL-RPRRSSALLASLL 331
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,868,554
Number of Sequences: 1393205
Number of extensions: 11776869
Number of successful extensions: 73312
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 46806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66378
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
