Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005122A_C01 KMC005122A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40089|ATP4_IPOBA ATP synthase delta' chain, mitochondrial pr... 159 3e-38
dbj|BAC21366.1| putative ATP synthase delta' chain, mitochondria... 151 6e-36
ref|NP_199514.1| ATP synthase delta chain, mitochondrial precurs... 146 1e-34
sp|Q41000|ATP4_PEA ATP synthase delta' chain, mitochondrial prec... 145 2e-34
dbj|BAA96453.1| F1-ATPase [Pyrus pyrifolia] 138 5e-32
>sp|Q40089|ATP4_IPOBA ATP synthase delta' chain, mitochondrial precursor
gi|82297|pir||A41740 H+-transporting two-sector ATPase
(EC 3.6.3.14) delta' chain precursor - sweet potato
gi|217938|dbj|BAA01511.1| mitochondrial F1-ATPase delta
subunit [Ipomoea batatas]
Length = 200
Score = 159 bits (401), Expect = 3e-38
Identities = 78/90 (86%), Positives = 86/90 (94%)
Frame = -3
Query: 547 ELKPGLLSVHEGNDVTKYFVSSGFAFVHANSVADIIAVEAVPLDRIDPNLVQKGLQDFTQ 368
ELKPG++SVHEGNDV+KYFVS GFAF+HANS ADIIAVEAVPLDRID NLVQKGL +FTQ
Sbjct: 111 ELKPGVMSVHEGNDVSKYFVSGGFAFIHANSFADIIAVEAVPLDRIDANLVQKGLAEFTQ 170
Query: 367 KLNSASTDLEKAEAQIGVDVHSALNSALTG 278
KLN+ASTD+EKAEAQIGVDVHSALN+ALTG
Sbjct: 171 KLNTASTDVEKAEAQIGVDVHSALNAALTG 200
>dbj|BAC21366.1| putative ATP synthase delta' chain, mitochondrial precursor [Oryza
sativa (japonica cultivar-group)]
Length = 205
Score = 151 bits (381), Expect = 6e-36
Identities = 74/90 (82%), Positives = 83/90 (92%)
Frame = -3
Query: 547 ELKPGLLSVHEGNDVTKYFVSSGFAFVHANSVADIIAVEAVPLDRIDPNLVQKGLQDFTQ 368
ELKPG+LSVHEGND+TKYFVSSGFAFVHANS+ADI+AVEAVPLD+IDP VQ+GL +F
Sbjct: 116 ELKPGVLSVHEGNDITKYFVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLAEFNA 175
Query: 367 KLNSASTDLEKAEAQIGVDVHSALNSALTG 278
KL SAST+LEKAEAQIGVDVHSALN+AL G
Sbjct: 176 KLGSASTELEKAEAQIGVDVHSALNAALAG 205
>ref|NP_199514.1| ATP synthase delta chain, mitochondrial precursor (sp|Q96252);
protein id: At5g47030.1, supported by cDNA: gi_13430525,
supported by cDNA: gi_15810620, supported by cDNA:
gi_1655483 [Arabidopsis thaliana]
gi|2493045|sp|Q96252|ATP4_ARATH ATP synthase delta'
chain, mitochondrial precursor
gi|1655484|dbj|BAA13601.1| delta-prime subunit of
mitochondrial F1-ATPase [Arabidopsis thaliana]
gi|9759445|dbj|BAB10242.1| ATP synthase delta' chain,
mitochondrial precursor [Arabidopsis thaliana]
gi|13430526|gb|AAK25885.1|AF360175_1 putative ATP
synthase delta chain, mitochondrial precursor
[Arabidopsis thaliana] gi|15810621|gb|AAL07198.1|
putative ATP synthase delta chain, mitochondrial
precursor [Arabidopsis thaliana]
Length = 203
Score = 146 bits (369), Expect = 1e-34
Identities = 72/90 (80%), Positives = 83/90 (92%)
Frame = -3
Query: 547 ELKPGLLSVHEGNDVTKYFVSSGFAFVHANSVADIIAVEAVPLDRIDPNLVQKGLQDFTQ 368
ELKPG++SVHEG DV KYF+SSGFAF+HANSVADIIAVEAVPLD IDP+ VQKGL +F Q
Sbjct: 114 ELKPGIMSVHEGTDVKKYFLSSGFAFLHANSVADIIAVEAVPLDHIDPSQVQKGLAEFQQ 173
Query: 367 KLNSASTDLEKAEAQIGVDVHSALNSALTG 278
KL SA+TDLEKAEAQIGV+VHSA+N+AL+G
Sbjct: 174 KLASATTDLEKAEAQIGVEVHSAINAALSG 203
>sp|Q41000|ATP4_PEA ATP synthase delta' chain, mitochondrial precursor
gi|7436138|pir||T06549 H+-transporting two-sector ATPase
(EC 3.6.3.14) delta' chain precursor - garden pea
gi|294087|gb|AAA33646.1| F1-ATPase delta-prime subunit
Length = 197
Score = 145 bits (367), Expect = 2e-34
Identities = 72/90 (80%), Positives = 83/90 (92%)
Frame = -3
Query: 547 ELKPGLLSVHEGNDVTKYFVSSGFAFVHANSVADIIAVEAVPLDRIDPNLVQKGLQDFTQ 368
ELKPG+L+V EG D TKYFVSSGF F+HANSVADIIAVEAVP++++D +LVQKGLQ+FTQ
Sbjct: 108 ELKPGVLTVQEGTDTTKYFVSSGFRFIHANSVADIIAVEAVPVNQLDRDLVQKGLQEFTQ 167
Query: 367 KLNSASTDLEKAEAQIGVDVHSALNSALTG 278
KLNSA+TDLEK EAQIG+DV SALNSALTG
Sbjct: 168 KLNSATTDLEKREAQIGIDVDSALNSALTG 197
>dbj|BAA96453.1| F1-ATPase [Pyrus pyrifolia]
Length = 76
Score = 138 bits (347), Expect = 5e-32
Identities = 69/76 (90%), Positives = 74/76 (96%)
Frame = -3
Query: 505 VTKYFVSSGFAFVHANSVADIIAVEAVPLDRIDPNLVQKGLQDFTQKLNSASTDLEKAEA 326
VTKYFVSSGFAF+HANS+ADIIAVEAVPLDR+D +LVQKGL +FTQKLNSASTDLEKAEA
Sbjct: 1 VTKYFVSSGFAFIHANSIADIIAVEAVPLDRVDASLVQKGLAEFTQKLNSASTDLEKAEA 60
Query: 325 QIGVDVHSALNSALTG 278
QIGVDVHSALNSALTG
Sbjct: 61 QIGVDVHSALNSALTG 76
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,506,213
Number of Sequences: 1393205
Number of extensions: 7715045
Number of successful extensions: 17790
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 17321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17773
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
