Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005116A_C01 KMC005116A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567210.1| expressed protein; protein id: At4g01150.1, sup... 212 4e-54
gb|AAB00107.1| unknown 211 9e-54
ref|NP_568035.1| expressed protein; protein id: At4g38100.1, sup... 94 2e-18
pir||T05637 hypothetical protein F20D10.220 - Arabidopsis thalia... 94 2e-18
ref|NP_566086.1| expressed protein; protein id: At2g46820.1, sup... 86 4e-16
>ref|NP_567210.1| expressed protein; protein id: At4g01150.1, supported by cDNA:
gi_14488087, supported by cDNA: gi_20147122, supported
by cDNA: gi_687676 [Arabidopsis thaliana]
gi|7485223|pir||T01726 hypothetical protein
A_IG002N01.18 - Arabidopsis thaliana
gi|2191138|gb|AAB61025.1| A_IG002N01.18 gene product
[Arabidopsis thaliana] gi|7267612|emb|CAB80924.1|
hypothetical protein [Arabidopsis thaliana]
gi|14488088|gb|AAK63864.1|AF389292_1 AT4g01150/F2N1_18
[Arabidopsis thaliana] gi|20147123|gb|AAM10278.1|
AT4g01150/F2N1_18 [Arabidopsis thaliana]
Length = 164
Score = 212 bits (539), Expect = 4e-54
Identities = 110/145 (75%), Positives = 126/145 (86%), Gaps = 2/145 (1%)
Frame = -3
Query: 657 RCSAVPYLPPRVSTTTTTTTLFSPSLKHFSES--RKPSLLQTRASSDETSSVDTNELISD 484
RCSAVPYLPPR ++ F+ LK S + +K LL+TRASS+ETSS+DTNELI+D
Sbjct: 24 RCSAVPYLPPRSFGRSS----FTVPLKLVSGNGLQKVELLKTRASSEETSSIDTNELITD 79
Query: 483 LKEKWDAVENKSTVIIYGGGALVAVWLSSILVGAINSVPLLPKIMELVGLGYTGWFVYRY 304
LKEKWD +ENKSTV+IYGGGA+VAVWLSSI+VGAINSVPLLPK+MELVGLGYTGWFVYRY
Sbjct: 80 LKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRY 139
Query: 303 LLFKSSRKELATDIESIKKKIAGTE 229
LLFKSSRKELA DIES+KKKIAG+E
Sbjct: 140 LLFKSSRKELAEDIESLKKKIAGSE 164
>gb|AAB00107.1| unknown
Length = 164
Score = 211 bits (536), Expect = 9e-54
Identities = 109/145 (75%), Positives = 126/145 (86%), Gaps = 2/145 (1%)
Frame = -3
Query: 657 RCSAVPYLPPRVSTTTTTTTLFSPSLKHFSES--RKPSLLQTRASSDETSSVDTNELISD 484
RCSAVPYLPPR ++ F+ LK S + +K LL+TRASS+ETSS+DTNELI+D
Sbjct: 24 RCSAVPYLPPRSFGRSS----FTVPLKLVSGNGLQKVELLKTRASSEETSSIDTNELITD 79
Query: 483 LKEKWDAVENKSTVIIYGGGALVAVWLSSILVGAINSVPLLPKIMELVGLGYTGWFVYRY 304
LKEKWD +ENKSTV+IYGGGA+VAVW+SSI+VGAINSVPLLPK+MELVGLGYTGWFVYRY
Sbjct: 80 LKEKWDGLENKSTVLIYGGGAIVAVWVSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRY 139
Query: 303 LLFKSSRKELATDIESIKKKIAGTE 229
LLFKSSRKELA DIES+KKKIAG+E
Sbjct: 140 LLFKSSRKELAEDIESLKKKIAGSE 164
>ref|NP_568035.1| expressed protein; protein id: At4g38100.1, supported by cDNA: 21.
[Arabidopsis thaliana] gi|21554198|gb|AAM63277.1|
unknown [Arabidopsis thaliana]
Length = 193
Score = 93.6 bits (231), Expect = 2e-18
Identities = 45/114 (39%), Positives = 77/114 (67%)
Frame = -3
Query: 570 SESRKPSLLQTRASSDETSSVDTNELISDLKEKWDAVENKSTVIIYGGGALVAVWLSSIL 391
+E + + +A +ET ++ E ++D+K D + +++YG GA+VA++L+S +
Sbjct: 84 AEEKNSNSEAPQAEDEETQAL---EFLNDIKLDSDKTYS---ILLYGSGAIVALYLTSAI 137
Query: 390 VGAINSVPLLPKIMELVGLGYTGWFVYRYLLFKSSRKELATDIESIKKKIAGTE 229
V ++ ++PL PK+ME+VGLGYT WF RYLLFK +R+EL T + IKK++ G++
Sbjct: 138 VSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 191
>pir||T05637 hypothetical protein F20D10.220 - Arabidopsis thaliana
gi|4467116|emb|CAB37550.1| hypothetical protein
[Arabidopsis thaliana] gi|7270793|emb|CAB80475.1|
hypothetical protein [Arabidopsis thaliana]
Length = 153
Score = 93.6 bits (231), Expect = 2e-18
Identities = 45/114 (39%), Positives = 77/114 (67%)
Frame = -3
Query: 570 SESRKPSLLQTRASSDETSSVDTNELISDLKEKWDAVENKSTVIIYGGGALVAVWLSSIL 391
+E + + +A +ET ++ E ++D+K D + +++YG GA+VA++L+S +
Sbjct: 44 AEEKNSNSEAPQAEDEETQAL---EFLNDIKLDSDKTYS---ILLYGSGAIVALYLTSAI 97
Query: 390 VGAINSVPLLPKIMELVGLGYTGWFVYRYLLFKSSRKELATDIESIKKKIAGTE 229
V ++ ++PL PK+ME+VGLGYT WF RYLLFK +R+EL T + IKK++ G++
Sbjct: 98 VSSLEAIPLFPKLMEVVGLGYTLWFTTRYLLFKRNREELKTKVSEIKKQVLGSD 151
>ref|NP_566086.1| expressed protein; protein id: At2g46820.1, supported by cDNA:
26967., supported by cDNA: gi_17473793 [Arabidopsis
thaliana] gi|7485752|pir||T02683 hypothetical protein
At2g46820 [imported] - Arabidopsis thaliana
gi|3510256|gb|AAC33500.1| expressed protein [Arabidopsis
thaliana] gi|17473794|gb|AAL38332.1| unknown protein
[Arabidopsis thaliana] gi|21386997|gb|AAM47902.1|
unknown protein [Arabidopsis thaliana]
Length = 174
Score = 85.9 bits (211), Expect = 4e-16
Identities = 43/142 (30%), Positives = 80/142 (56%), Gaps = 1/142 (0%)
Frame = -3
Query: 654 CSAVPYLPPRVSTTTTTTTLFSPSLKHFSESRKPSLL-QTRASSDETSSVDTNELISDLK 478
C ++P LP + T T + + +R + + + A++ E + + E++ +
Sbjct: 32 CISLPTLPIQSHTRAAKATAYCRKIVRNVVTRATTEVGEAPATTTEAETTELPEIVKTAQ 91
Query: 477 EKWDAVENKSTVIIYGGGALVAVWLSSILVGAINSVPLLPKIMELVGLGYTGWFVYRYLL 298
E W+ V++K + +VA+W S+ ++ AI+ +PL+P ++ELVG+GYTGWF Y+ L+
Sbjct: 92 EAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWFTYKNLV 151
Query: 297 FKSSRKELATDIESIKKKIAGT 232
FK R+ L ++S K I G+
Sbjct: 152 FKPDREALFEKVKSTYKDILGS 173
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 581,464,011
Number of Sequences: 1393205
Number of extensions: 13111063
Number of successful extensions: 112270
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 59576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96368
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
