Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005109A_C01 KMC005109A_c01
(669 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65821.1| unknown [Arabidopsis thaliana] 94 1e-22
ref|NP_566240.1| expressed protein; protein id: At3g04860.1, sup... 94 1e-22
ref|NP_198167.1| putative protein; protein id: At5g28150.1, supp... 102 5e-21
gb|AAM76760.1| hypothetical protein [Arabidopsis thaliana] 71 2e-11
ref|NP_180345.1| hypothetical protein; protein id: At2g27770.1 [... 71 2e-11
>gb|AAM65821.1| unknown [Arabidopsis thaliana]
Length = 289
Score = 94.0 bits (232), Expect(2) = 1e-22
Identities = 40/69 (57%), Positives = 54/69 (77%), Gaps = 2/69 (2%)
Frame = -1
Query: 669 NDPCLVIRIDSRTVMPVKPLHWKFRGNHTLLVDGIPVEVFWDIHNWLFG--NTIGNAVFM 496
+DPCL++R+D + +M V+ LHWKFRGN T++V+ I VEV WD+H+W FG ++ GNAVFM
Sbjct: 193 SDPCLIVRVDGKILMQVQRLHWKFRGNDTIIVNRISVEVLWDVHSWFFGLPSSPGNAVFM 252
Query: 495 FPTCISTEK 469
F TC S EK
Sbjct: 253 FRTCQSVEK 261
Score = 34.3 bits (77), Expect(2) = 1e-22
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 407 AQSQGLGFSLILYAWKNE 354
++SQ GFSLILYAWKNE
Sbjct: 272 SKSQSFGFSLILYAWKNE 289
>ref|NP_566240.1| expressed protein; protein id: At3g04860.1, supported by cDNA:
5170., supported by cDNA: gi_16612260 [Arabidopsis
thaliana] gi|12322843|gb|AAG51405.1|AC009465_5 unknown
protein; 64727-65596 [Arabidopsis thaliana]
gi|16612261|gb|AAL27500.1|AF439828_1 AT3g04860/T9J14_19
[Arabidopsis thaliana] gi|21928087|gb|AAM78072.1|
AT3g04860/T9J14_19 [Arabidopsis thaliana]
Length = 289
Score = 94.0 bits (232), Expect(2) = 1e-22
Identities = 40/69 (57%), Positives = 54/69 (77%), Gaps = 2/69 (2%)
Frame = -1
Query: 669 NDPCLVIRIDSRTVMPVKPLHWKFRGNHTLLVDGIPVEVFWDIHNWLFG--NTIGNAVFM 496
+DPCL++R+D + +M V+ LHWKFRGN T++V+ I VEV WD+H+W FG ++ GNAVFM
Sbjct: 193 SDPCLIVRVDGKILMQVQRLHWKFRGNDTIIVNRISVEVLWDVHSWFFGLPSSPGNAVFM 252
Query: 495 FPTCISTEK 469
F TC S EK
Sbjct: 253 FRTCQSVEK 261
Score = 34.3 bits (77), Expect(2) = 1e-22
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = -2
Query: 407 AQSQGLGFSLILYAWKNE 354
++SQ GFSLILYAWKNE
Sbjct: 272 SKSQSFGFSLILYAWKNE 289
>ref|NP_198167.1| putative protein; protein id: At5g28150.1, supported by cDNA:
gi_19699076 [Arabidopsis thaliana]
gi|19699077|gb|AAL90906.1| AT5g28150/T24G3_80
[Arabidopsis thaliana] gi|23308357|gb|AAN18148.1|
At5g28150/T24G3_80 [Arabidopsis thaliana]
Length = 289
Score = 102 bits (254), Expect = 5e-21
Identities = 49/94 (52%), Positives = 63/94 (66%), Gaps = 1/94 (1%)
Frame = -1
Query: 666 DPCLVIRIDSRTVMPVKPLHWKFRGNHTLLVDGIPVEVFWDIHNWLFG-NTIGNAVFMFP 490
DPCLV+R+D +T++ VK L WKFRGN T++V+ + VEV WD+H+WLFG T GNAVFMF
Sbjct: 193 DPCLVVRVDGKTLLQVKRLKWKFRGNDTIVVNKMTVEVLWDVHSWLFGLPTTGNAVFMFR 252
Query: 489 TCISTEKGQSASDPSVLKWAYSHEFRDCPVARSW 388
TC STEK S S + SH F + +W
Sbjct: 253 TCQSTEKSLSFSQDVTTTNSKSHSFGFSLILYAW 286
>gb|AAM76760.1| hypothetical protein [Arabidopsis thaliana]
Length = 320
Score = 70.9 bits (172), Expect = 2e-11
Identities = 31/61 (50%), Positives = 41/61 (66%), Gaps = 2/61 (3%)
Frame = -1
Query: 663 PCLVIRIDSRTVMPVKPLHWKFRGNHTLLVDGIPVEVFWDIHNWLFGN--TIGNAVFMFP 490
P L + ID +TV+ VK L W FRGN T+ +DG+ V++ WD+H+W F N G AVFMF
Sbjct: 225 PVLSVCIDKKTVIKVKRLQWNFRGNQTIFLDGLLVDLMWDVHDWFFSNQGACGRAVFMFR 284
Query: 489 T 487
T
Sbjct: 285 T 285
>ref|NP_180345.1| hypothetical protein; protein id: At2g27770.1 [Arabidopsis
thaliana] gi|25407920|pir||G84676 hypothetical protein
At2g27770 [imported] - Arabidopsis thaliana
gi|3860255|gb|AAC73023.1| hypothetical protein
[Arabidopsis thaliana] gi|26449502|dbj|BAC41877.1|
unknown protein [Arabidopsis thaliana]
gi|28950899|gb|AAO63373.1| At2g27770 [Arabidopsis
thaliana]
Length = 320
Score = 70.9 bits (172), Expect = 2e-11
Identities = 31/61 (50%), Positives = 41/61 (66%), Gaps = 2/61 (3%)
Frame = -1
Query: 663 PCLVIRIDSRTVMPVKPLHWKFRGNHTLLVDGIPVEVFWDIHNWLFGN--TIGNAVFMFP 490
P L + ID +TV+ VK L W FRGN T+ +DG+ V++ WD+H+W F N G AVFMF
Sbjct: 225 PVLSVCIDKKTVIKVKRLQWNFRGNQTIFLDGLLVDLMWDVHDWFFSNQGACGRAVFMFR 284
Query: 489 T 487
T
Sbjct: 285 T 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 583,116,129
Number of Sequences: 1393205
Number of extensions: 12660105
Number of successful extensions: 30409
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 29593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30402
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
