Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005108A_C02 KMC005108A_c02
(725 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC80857.1| C-type MADS box protein [Malus x domestica] 135 4e-31
dbj|BAA90743.1| MADS-box protein [Rosa rugosa] 126 3e-28
gb|AAK58564.1|AF265562_1 MAD-box transcripion factor [Vitis vini... 121 1e-26
sp|Q43585|AG_TOBAC AGAMOUS protein (NAG1) gi|7446523|pir||T03592... 120 3e-26
gb|AAD38119.1| AGAMOUS homolog [Liquidambar styraciflua] 120 3e-26
>emb|CAC80857.1| C-type MADS box protein [Malus x domestica]
Length = 242
Score = 135 bits (341), Expect = 4e-31
Identities = 70/111 (63%), Positives = 84/111 (75%)
Frame = -3
Query: 723 LSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQ 544
L +KELKNLEGRLEKG+SR+RS+K+E LF+++EFMQKRE ELQ+HNN+LRAKIAE ER
Sbjct: 134 LKVKELKNLEGRLEKGISRIRSKKNEILFSEIEFMQKRETELQHHNNFLRAKIAESER-- 191
Query: 543 QQQQQQQQQPQNLMLSESLPSPSYDRNFFPANLLGSDNQYSRPDQTALPLV 391
+QQQQQ S+PS SYDRNFFP L ++N Y R QTAL LV
Sbjct: 192 EQQQQQTHMIPGTSYDPSMPSNSYDRNFFPVILESNNNHYPRQGQTALQLV 242
>dbj|BAA90743.1| MADS-box protein [Rosa rugosa]
Length = 249
Score = 126 bits (317), Expect = 3e-28
Identities = 68/112 (60%), Positives = 87/112 (76%), Gaps = 2/112 (1%)
Frame = -3
Query: 723 LSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQ 544
L++KELKNLEGRLEKG+SR+RS+K+E LFA++E+MQKREIELQNHNN+LRAKIAE++RA
Sbjct: 138 LNVKELKNLEGRLEKGISRIRSKKNEMLFAEIEYMQKREIELQNHNNFLRAKIAENDRA- 196
Query: 543 QQQQQQQQQPQNL-MLSESLPSP-SYDRNFFPANLLGSDNQYSRPDQTALPL 394
QQQQ P L +S+P P SYDR+F P +L S++ Y+R Q PL
Sbjct: 197 -QQQQANMMPGTLSAYDQSMPPPQSYDRSFLPV-ILESNHHYNRQGQNQTPL 246
>gb|AAK58564.1|AF265562_1 MAD-box transcripion factor [Vitis vinifera]
Length = 225
Score = 121 bits (303), Expect = 1e-26
Identities = 69/115 (60%), Positives = 84/115 (73%), Gaps = 4/115 (3%)
Frame = -3
Query: 723 LSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQ 544
L+ KELKNLE RLEKG+SR+RS+K+E LFA++E+MQKREIELQN N +LRA+IAE+ERAQ
Sbjct: 119 LNFKELKNLETRLEKGISRIRSKKNELLFAEIEYMQKREIELQNSNLFLRAQIAENERAQ 178
Query: 543 QQQQQQQQQPQNLMLS---ESLPSPSYD-RNFFPANLLGSDNQYSRPDQTALPLV 391
QQ NLM ES+P YD +N P NLL ++ YSR DQTAL LV
Sbjct: 179 QQ--------MNLMPGSQYESVPQQPYDSQNLLPVNLLDPNHHYSRHDQTALQLV 225
>sp|Q43585|AG_TOBAC AGAMOUS protein (NAG1) gi|7446523|pir||T03592 floral homeotic
protein NAG1 - common tobacco gi|431736|gb|AAA17033.1|
NAG1
Length = 248
Score = 120 bits (300), Expect = 3e-26
Identities = 67/117 (57%), Positives = 88/117 (74%), Gaps = 6/117 (5%)
Frame = -3
Query: 723 LSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQ 544
LSL++LKNLE ++EKG+S++RS+K+E LFA++E+MQKREI+L N+N YLRAKIAE ERAQ
Sbjct: 135 LSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQ 194
Query: 543 QQQQQQQQQPQNLMLSES----LPSP-SYD-RNFFPANLLGSDNQYSRPDQTALPLV 391
QQQQQQQ NLM S +P P +D RN+ N L ++N Y+R DQ +L LV
Sbjct: 195 QQQQQQQ---MNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQDQPSLQLV 248
>gb|AAD38119.1| AGAMOUS homolog [Liquidambar styraciflua]
Length = 244
Score = 120 bits (300), Expect = 3e-26
Identities = 69/113 (61%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
Frame = -3
Query: 723 LSLKELKNLEGRLEKGLSRVRSRKHETLFADVEFMQKREIELQNHNNYLRAKIAEHERAQ 544
L+ +ELKNLEGRLEKG+SR+RS+K+E LFA++E+MQKREIELQN N YLRAKIAE+ER
Sbjct: 137 LTFRELKNLEGRLEKGISRIRSKKNELLFAEIEYMQKREIELQNANMYLRAKIAENER-- 194
Query: 543 QQQQQQQQQPQNLMLSESLPSPS-YDRNFFPANLLGSDN-QYSRPDQTALPLV 391
QQQ + P ++ E++PS YDR+F ANLL N YSR DQT L LV
Sbjct: 195 -NQQQTELMPGSVY--ETMPSSQPYDRSFLVANLLEPPNHHYSRQDQTPLQLV 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 541,077,114
Number of Sequences: 1393205
Number of extensions: 11072313
Number of successful extensions: 121206
Number of sequences better than 10.0: 1171
Number of HSP's better than 10.0 without gapping: 39591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71838
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
