Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005106A_C01 KMC005106A_c01
(412 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52312.1| similar to Dictyostelium discoideum (Slime mold).... 33 1.1
gb|AAO51573.1| similar to Dictyostelium discoideum (Slime mold).... 33 1.1
gb|EAA21352.1| hypothetical protein [Plasmodium yoelii yoelii] 32 1.4
ref|NP_077255.1|ND2_15606 NADH dehydrogenase subunit 2 [Trichine... 32 1.4
gb|AAO51254.1| similar to Plasmodium falciparum. Hypothetical pr... 32 2.4
>gb|AAO52312.1| similar to Dictyostelium discoideum (Slime mold). Ubiquitin
hydrolase B (Fragment)
Length = 1259
Score = 32.7 bits (73), Expect = 1.1
Identities = 26/97 (26%), Positives = 43/97 (43%), Gaps = 3/97 (3%)
Frame = +2
Query: 2 LKNNNDFIINSNNIHHDAKTLKILQITYT*R*LDQQ---IHGQSCQEHDEQYSSMNRPFF 172
L NNN+ N+NN +++ Q T ++ + I+ + + ++ N
Sbjct: 58 LNNNNNNNNNNNNNNNNNNNNNKKQNTINNNKINSKQTPINTTNTNTTNTTNTTTNTTTT 117
Query: 173 SIMVKTNCTTNKITATTRINTSSNNLHAIINFNVFRN 283
+I TN TTN TAT NT++N + N N N
Sbjct: 118 NIPTNTNTTTNTNTATNTTNTTNNTTNTTTNTNAPTN 154
>gb|AAO51573.1| similar to Dictyostelium discoideum (Slime mold). Adenylyl cyclase
Length = 1212
Score = 32.7 bits (73), Expect = 1.1
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Frame = +2
Query: 8 NNNDFIINSNNIHHD-AKTLKILQITYT*R*LDQQIHGQSC--QEHDEQYSSMNRPFFSI 178
NNN+ +NNIH+ + ++LQ + L QQ H Q Q+ +Q SS+N
Sbjct: 160 NNNNKPFGTNNIHYSLVQQQQLLQQQAQQQLLQQQQHQQLLLQQQQAQQQSSLNNSL--- 216
Query: 179 MVKTNCTTNKITATTRINTSSNNLHAII--NFN 271
N + N T +NTS+NN + ++ NFN
Sbjct: 217 ----NSSGNNST----LNTSNNNNNVLLGANFN 241
>gb|EAA21352.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2095
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/45 (37%), Positives = 27/45 (59%), Gaps = 2/45 (4%)
Frame = +2
Query: 179 MVKTNCTTNKITATTRINTSSNNLHAIINF--NVFRNLGSLSTSS 307
++K N T+ +T+ INT+ NN+H I+N NV + G + SS
Sbjct: 628 ILKVNNTSLNVTSLPIINTTINNMHQIMNHNKNVINDCGPVKESS 672
>ref|NP_077255.1|ND2_15606 NADH dehydrogenase subunit 2 [Trichinella spiralis]
gi|13123589|gb|AAK12895.1|AF293969_1 NADH dehydrogenase
subunit 2 [Trichinella spiralis]
Length = 295
Score = 32.3 bits (72), Expect = 1.4
Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 18/109 (16%)
Frame = -2
Query: 276 KTLKFMIACKLLELVLILVVAVILLVVQLVFTIIEKNGRFMLLYCSSCS*QDWP*ICWSS 97
K + F+++ +++ VLI VV V+ ++ VF+ + FM+L+ SSC W + S
Sbjct: 116 KVVPFVVSMLVVDSVLIGVVCVVSILWS-VFSYWNVSSVFMILFYSSCVHSSWLWLASSD 174
Query: 96 --------YLYVYVICRIFRVFAS----------*WMLLLLIIKSLLFF 4
+YV V+ + R +S +MLLL + S LFF
Sbjct: 175 LSKFVIYYLMYVSVMFVVMRSISSEGYCDPMISYMFMLLLGLPTSFLFF 223
>gb|AAO51254.1| similar to Plasmodium falciparum. Hypothetical protein
[Dictyostelium discoideum]
Length = 1123
Score = 31.6 bits (70), Expect = 2.4
Identities = 25/107 (23%), Positives = 49/107 (45%), Gaps = 3/107 (2%)
Frame = +2
Query: 8 NNNDFIINSNNIHHDAKTL---KILQITYT*R*LDQQIHGQSCQEHDEQYSSMNRPFFSI 178
NNN+ N+NNI + L +Q+T+ + QQ Q Q+H +Q+ +
Sbjct: 535 NNNNNSNNNNNISSQERPLLNSPHVQLTHQQQQQQQQQQQQQQQQHQQQHQKIGM----- 589
Query: 179 MVKTNCTTNKITATTRINTSSNNLHAIINFNVFRNLGSLSTSSWLCR 319
+ ++ ++ + S++L+ + + +GS S SS LC+
Sbjct: 590 ---SKSSSELQVPSSNYHKQSDDLNPLDFLSAIATMGSNSLSSILCK 633
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 328,913,788
Number of Sequences: 1393205
Number of extensions: 6273141
Number of successful extensions: 15228
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15164
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
