KMC005103A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC005103A_C01 KMC005103A_c01
cgggcccccctcgattcaatttccgctacTCTGTGCGATGGAAGAAGTGATGGACATACC
CCCAAGTGGAGGCGATGAACGAGGACTTCGATCTCCCCGAAAGACAAGGTGGGCGAGGAG
AGAGAGATCGGCAACAGTGGTCTCAGGAAGAAGCTCCTCAAGGAAGGTCAAGGTTGGGAA
ACCCCTGAAGTCGGCGACGAAGTCCAAGTTCACTACACGGGGACCTTGCTTGACGGGTCG
AAATTCGATTCAAGCCGCGACAGGGATGCTCCTTTCTCCTTCACGCTCGGACAGGGGCAA
GTAATTAAAGGATGGGATGAAGGTATCAAAACCATGAAGAAAGGTGAAAATGCACTTTTC
ACCATACCTCCTGAGCTAGCTTATGGTGAAAGTGGTTCCCCTCCAACAATTCCTCCTAAT
GCAACACTCCAATTTGATGTTGAGCTTCTGTCTTGGACTAGTGTGAAGGATATAAGCAAG
GATGGCGGGATATATAAGAAGATATTGACTGAGGGGGAGAAATGGGAGAAGCCCAAGGAT
CTTGA


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC005103A_C01 KMC005103A_c01
         (545 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q43207|FKB7_WHEAT 70 kDa peptidylprolyl isomerase (Peptidylpr...   267  5e-71
ref|NP_199668.1| peptidylprolyl isomerase; protein id: At5g48570...   254  5e-67
pir||S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1 - Arabido...   249  2e-65
gb|AAB82061.1| rof1 [Arabidopsis thaliana]                            249  2e-65
ref|NP_189160.2| peptidylprolyl isomerase (ROF1); protein id: At...   249  2e-65

>sp|Q43207|FKB7_WHEAT 70 kDa peptidylprolyl isomerase (Peptidylprolyl cis-trans
           isomerase) (PPiase) (Rotamase) gi|1076772|pir||S55383
           peptidylprolyl isomerase (EC 5.2.1.8) - wheat
           gi|854626|emb|CAA60505.1| peptidylprolyl isomerase
           [Triticum aestivum]
          Length = 559

 Score =  267 bits (683), Expect = 5e-71
 Identities = 126/148 (85%), Positives = 135/148 (91%)
 Frame = +1

Query: 97  PKDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPF 276
           P  KVGEE EIG  GL+KKLLKEG+GW+TPEVGDEV+VHYTGTLLDG KFDSSRDRD  F
Sbjct: 28  PGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTF 87

Query: 277 SFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 456
            F LGQGQVIKGWD+GIKTMKKGENALFTIPPELAYGESGSPPTIP NATLQFDVELLSW
Sbjct: 88  KFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSW 147

Query: 457 TSVKDISKDGGIYKKILTEGEKWEKPKD 540
           TSV+DI+KDGGI+KKIL EG+KWE PKD
Sbjct: 148 TSVRDIAKDGGIFKKILKEGDKWENPKD 175

 Score =  105 bits (262), Expect = 4e-22
 Identities = 56/141 (39%), Positives = 79/141 (55%), Gaps = 5/141 (3%)
 Frame = +1

Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
           + G+ KK+LKEG  WE P+  DEV V Y   L DG+    S   +    FT+  G +   
Sbjct: 156 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVE----FTVKDGHLCPA 211

Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
             + +KTMKKGE  L  + P+  +GE G P       +PPNA+L  D+EL+SW +V +I 
Sbjct: 212 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIG 271

Query: 478 KDGGIYKKILTEGEKWEKPKD 540
            D  I KK+L E E +E+P +
Sbjct: 272 DDKKILKKVLKEXEGYERPNE 292

 Score = 94.7 bits (234), Expect = 6e-19
 Identities = 60/145 (41%), Positives = 83/145 (56%), Gaps = 3/145 (2%)
 Frame = +1

Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF-DSSRDRDAPFSF 282
           ++G++++I      KK+LKE +G+E P  G  V V  TG L DG+ F     D   PF F
Sbjct: 269 EIGDDKKI-----LKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEF 323

Query: 283 TLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYG--ESGSPPTIPPNATLQFDVELLSW 456
              +  VI+G D  +  MKKGE AL TIPPE AYG  ES     +PPN+T+ ++VEL+S+
Sbjct: 324 KTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 383

Query: 457 TSVKDISKDGGIYKKILTEGEKWEK 531
              K+ S D    +KI   G K E+
Sbjct: 384 VKDKE-SWDLNNSEKIEAAGTKKEE 407

>ref|NP_199668.1| peptidylprolyl isomerase; protein id: At5g48570.1 [Arabidopsis
           thaliana] gi|10177347|dbj|BAB10690.1| peptidylprolyl
           isomerase [Arabidopsis thaliana]
          Length = 578

 Score =  254 bits (649), Expect = 5e-67
 Identities = 119/150 (79%), Positives = 133/150 (88%)
 Frame = +1

Query: 94  SPKDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAP 273
           +P  K+GEE EIG SGL+KKL+KE + W+TPE GDEV+VHYTGTLLDG+KFDSSRDR  P
Sbjct: 32  APYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTP 91

Query: 274 FSFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLS 453
           F FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++
Sbjct: 92  FKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIA 151

Query: 454 WTSVKDISKDGGIYKKILTEGEKWEKPKDL 543
           W SVKDI  DGG+ KKI+ EGEKWEKPKDL
Sbjct: 152 WRSVKDICGDGGVSKKIIVEGEKWEKPKDL 181

 Score =  111 bits (278), Expect = 5e-24
 Identities = 58/143 (40%), Positives = 85/143 (58%), Gaps = 6/143 (4%)
 Frame = +1

Query: 130 GNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIK 309
           G+ G+ KK++ EG+ WE P+  DEV V Y   L DG+    S   +    FT+ +G    
Sbjct: 160 GDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVE----FTVKEGHFCP 215

Query: 310 GWDEGIKTMKKGENALFTIPPELAYGESGSPPT------IPPNATLQFDVELLSWTSVKD 471
              + +KTMK+GE  L T+ P+  +GE G P +      IPPNATLQ D+EL+SW +V +
Sbjct: 216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275

Query: 472 ISKDGGIYKKILTEGEKWEKPKD 540
           ++ D  + KKIL EGE +E+P +
Sbjct: 276 VTDDRKVIKKILKEGEGYERPNE 298

 Score = 88.2 bits (217), Expect = 6e-17
 Identities = 53/134 (39%), Positives = 79/134 (58%), Gaps = 6/134 (4%)
 Frame = +1

Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF---DSSRDRDAPFSFTLGQGQVIKGWD 318
           KK+LKEG+G+E P  G  V++   G L DG+         + + PF F + + QVI+G +
Sbjct: 284 KKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLE 343

Query: 319 EGIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGG 489
           + +  MKKGE AL TI PE A+G S S      IPPN+T+ ++VEL+S+   K+ S D  
Sbjct: 344 KAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKEKE-SWDMN 402

Query: 490 IYKKILTEGEKWEK 531
             ++I   G+K E+
Sbjct: 403 TQERIEAAGKKKEE 416

>pir||S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1 - Arabidopsis thaliana
           gi|1373396|gb|AAB82062.1| rof1 [Arabidopsis thaliana]
          Length = 551

 Score =  249 bits (636), Expect = 2e-65
 Identities = 121/146 (82%), Positives = 130/146 (88%)
 Frame = +1

Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFT 285
           KVGEE+EI   GL+KKLLKEG+G+ETPE GDEV+VHYTGTLLDG+KFDSSRDR  PF FT
Sbjct: 29  KVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFT 87

Query: 286 LGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 465
           LGQGQVIKGWD GIKTMKKGENA+FTIP ELAYGESGSPPTIP NATLQFDVELL W SV
Sbjct: 88  LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSV 147

Query: 466 KDISKDGGIYKKILTEGEKWEKPKDL 543
           KDI KDGG++KKIL  GEKWE PKDL
Sbjct: 148 KDICKDGGVFKKILAVGEKWENPKDL 173

 Score =  103 bits (258), Expect = 1e-21
 Identities = 52/141 (36%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
 Frame = +1

Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
           + G+ KK+L  G+ WE P+  DEV V +   L DG+    S   +    FT+  G     
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE----FTVKDGHFCPA 208

Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
             + +KTMKKGE  L T+ P+  +GE G P +     +PPNATL+ ++EL+SW +V +++
Sbjct: 209 LTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVT 268

Query: 478 KDGGIYKKILTEGEKWEKPKD 540
            D  + KK+L EG+ +E+P +
Sbjct: 269 DDNKVVKKVLKEGDGYERPNE 289

 Score = 84.7 bits (208), Expect = 6e-16
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
 Frame = +1

Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF--DSSRDRDAPFSFTLGQGQVIKGWDE 321
           KK+LKEG G+E P  G  V+V   G L DG+ F      + + PF F   + QV+ G D 
Sbjct: 275 KKVLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR 334

Query: 322 GIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGGI 492
            +  MKKGE AL TI PE A+G + S      +PPN+T+ ++V+LL++   ++ S D   
Sbjct: 335 AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE-SWDMNT 393

Query: 493 YKKILTEGEKWEK 531
            +KI    +K E+
Sbjct: 394 EEKIEAASKKKEE 406

>gb|AAB82061.1| rof1 [Arabidopsis thaliana]
          Length = 551

 Score =  249 bits (636), Expect = 2e-65
 Identities = 121/146 (82%), Positives = 130/146 (88%)
 Frame = +1

Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFT 285
           KVGEE+EI   GL+KKLLKEG+G+ETPE GDEV+VHYTGTLLDG+KFDSSRDR  PF FT
Sbjct: 29  KVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFT 87

Query: 286 LGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 465
           LGQGQVIKGWD GIKTMKKGENA+FTIP ELAYGESGSPPTIP NATLQFDVELL W SV
Sbjct: 88  LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSV 147

Query: 466 KDISKDGGIYKKILTEGEKWEKPKDL 543
           KDI KDGG++KKIL  GEKWE PKDL
Sbjct: 148 KDICKDGGVFKKILAVGEKWENPKDL 173

 Score =  103 bits (258), Expect = 1e-21
 Identities = 52/141 (36%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
 Frame = +1

Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
           + G+ KK+L  G+ WE P+  DEV V +   L DG+    S   +    FT+  G     
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE----FTVKDGHFCPA 208

Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
             + +KTMKKGE  L T+ P+  +GE G P +     +PPNATL+ ++EL+SW +V +++
Sbjct: 209 LTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVT 268

Query: 478 KDGGIYKKILTEGEKWEKPKD 540
            D  + KK+L EG+ +E+P +
Sbjct: 269 DDNKVVKKVLKEGDGYERPNE 289

 Score = 84.7 bits (208), Expect = 6e-16
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
 Frame = +1

Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF--DSSRDRDAPFSFTLGQGQVIKGWDE 321
           KK+LKEG G+E P  G  V+V   G L DG+ F      + + PF F   + QV+ G D 
Sbjct: 275 KKVLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR 334

Query: 322 GIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGGI 492
            +  MKKGE AL TI PE A+G + S      +PPN+T+ ++V+LL++   ++ S D   
Sbjct: 335 AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE-SWDMNT 393

Query: 493 YKKILTEGEKWEK 531
            +KI    +K E+
Sbjct: 394 EEKIEAASKKKEE 406

>ref|NP_189160.2| peptidylprolyl isomerase (ROF1); protein id: At3g25230.1
           [Arabidopsis thaliana] gi|9294180|dbj|BAB02082.1|
           peptidylprolyl isomerase; FK506-binding protein
           [Arabidopsis thaliana]
          Length = 555

 Score =  249 bits (636), Expect = 2e-65
 Identities = 121/146 (82%), Positives = 130/146 (88%)
 Frame = +1

Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFT 285
           KVGEE+EI   GL+KKLLKEG+G+ETPE GDEV+VHYTGTLLDG+KFDSSRDR  PF FT
Sbjct: 29  KVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFT 87

Query: 286 LGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 465
           LGQGQVIKGWD GIKTMKKGENA+FTIP ELAYGESGSPPTIP NATLQFDVELL W SV
Sbjct: 88  LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSV 147

Query: 466 KDISKDGGIYKKILTEGEKWEKPKDL 543
           KDI KDGG++KKIL  GEKWE PKDL
Sbjct: 148 KDICKDGGVFKKILAVGEKWENPKDL 173

 Score =  103 bits (258), Expect = 1e-21
 Identities = 52/141 (36%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
 Frame = +1

Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
           + G+ KK+L  G+ WE P+  DEV V +   L DG+    S   +    FT+  G     
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE----FTVKDGHFCPA 208

Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
             + +KTMKKGE  L T+ P+  +GE G P +     +PPNATL+ ++EL+SW +V +++
Sbjct: 209 LTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVT 268

Query: 478 KDGGIYKKILTEGEKWEKPKD 540
            D  + KK+L EG+ +E+P +
Sbjct: 269 DDNKVVKKVLKEGDGYERPNE 289

 Score = 84.7 bits (208), Expect = 6e-16
 Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
 Frame = +1

Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF--DSSRDRDAPFSFTLGQGQVIKGWDE 321
           KK+LKEG G+E P  G  V+V   G L DG+ F      + + PF F   + QV+ G D 
Sbjct: 275 KKVLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR 334

Query: 322 GIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGGI 492
            +  MKKGE AL TI PE A+G + S      +PPN+T+ ++V+LL++   ++ S D   
Sbjct: 335 AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE-SWDMNT 393

Query: 493 YKKILTEGEKWEK 531
            +KI    +K E+
Sbjct: 394 EEKIEAASKKKEE 406

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.314    0.137    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,100,341
Number of Sequences: 1393205
Number of extensions: 12432606
Number of successful extensions: 30491
Number of sequences better than 10.0: 690
Number of HSP's better than 10.0 without gapping: 28698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30028
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)


EST assemble image


clone accession position
1 MPD014a08_f AV770925 1 517
2 MPDL059d06_f AV779499 30 545




Lotus japonicus
Kazusa DNA Research Institute