KMC005103A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC005103A_C01 KMC005103A_c01
cgggcccccctcgattcaatttccgctacTCTGTGCGATGGAAGAAGTGATGGACATACC
CCCAAGTGGAGGCGATGAACGAGGACTTCGATCTCCCCGAAAGACAAGGTGGGCGAGGAG
AGAGAGATCGGCAACAGTGGTCTCAGGAAGAAGCTCCTCAAGGAAGGTCAAGGTTGGGAA
ACCCCTGAAGTCGGCGACGAAGTCCAAGTTCACTACACGGGGACCTTGCTTGACGGGTCG
AAATTCGATTCAAGCCGCGACAGGGATGCTCCTTTCTCCTTCACGCTCGGACAGGGGCAA
GTAATTAAAGGATGGGATGAAGGTATCAAAACCATGAAGAAAGGTGAAAATGCACTTTTC
ACCATACCTCCTGAGCTAGCTTATGGTGAAAGTGGTTCCCCTCCAACAATTCCTCCTAAT
GCAACACTCCAATTTGATGTTGAGCTTCTGTCTTGGACTAGTGTGAAGGATATAAGCAAG
GATGGCGGGATATATAAGAAGATATTGACTGAGGGGGAGAAATGGGAGAAGCCCAAGGAT
CTTGA
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005103A_C01 KMC005103A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43207|FKB7_WHEAT 70 kDa peptidylprolyl isomerase (Peptidylpr... 267 5e-71
ref|NP_199668.1| peptidylprolyl isomerase; protein id: At5g48570... 254 5e-67
pir||S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1 - Arabido... 249 2e-65
gb|AAB82061.1| rof1 [Arabidopsis thaliana] 249 2e-65
ref|NP_189160.2| peptidylprolyl isomerase (ROF1); protein id: At... 249 2e-65
>sp|Q43207|FKB7_WHEAT 70 kDa peptidylprolyl isomerase (Peptidylprolyl cis-trans
isomerase) (PPiase) (Rotamase) gi|1076772|pir||S55383
peptidylprolyl isomerase (EC 5.2.1.8) - wheat
gi|854626|emb|CAA60505.1| peptidylprolyl isomerase
[Triticum aestivum]
Length = 559
Score = 267 bits (683), Expect = 5e-71
Identities = 126/148 (85%), Positives = 135/148 (91%)
Frame = +1
Query: 97 PKDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPF 276
P KVGEE EIG GL+KKLLKEG+GW+TPEVGDEV+VHYTGTLLDG KFDSSRDRD F
Sbjct: 28 PGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTF 87
Query: 277 SFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 456
F LGQGQVIKGWD+GIKTMKKGENALFTIPPELAYGESGSPPTIP NATLQFDVELLSW
Sbjct: 88 KFKLGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSW 147
Query: 457 TSVKDISKDGGIYKKILTEGEKWEKPKD 540
TSV+DI+KDGGI+KKIL EG+KWE PKD
Sbjct: 148 TSVRDIAKDGGIFKKILKEGDKWENPKD 175
Score = 105 bits (262), Expect = 4e-22
Identities = 56/141 (39%), Positives = 79/141 (55%), Gaps = 5/141 (3%)
Frame = +1
Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
+ G+ KK+LKEG WE P+ DEV V Y L DG+ S + FT+ G +
Sbjct: 156 DGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVE----FTVKDGHLCPA 211
Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
+ +KTMKKGE L + P+ +GE G P +PPNA+L D+EL+SW +V +I
Sbjct: 212 LAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIG 271
Query: 478 KDGGIYKKILTEGEKWEKPKD 540
D I KK+L E E +E+P +
Sbjct: 272 DDKKILKKVLKEXEGYERPNE 292
Score = 94.7 bits (234), Expect = 6e-19
Identities = 60/145 (41%), Positives = 83/145 (56%), Gaps = 3/145 (2%)
Frame = +1
Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF-DSSRDRDAPFSF 282
++G++++I KK+LKE +G+E P G V V TG L DG+ F D PF F
Sbjct: 269 EIGDDKKI-----LKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEPFEF 323
Query: 283 TLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYG--ESGSPPTIPPNATLQFDVELLSW 456
+ VI+G D + MKKGE AL TIPPE AYG ES +PPN+T+ ++VEL+S+
Sbjct: 324 KTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQDAIVPPNSTVIYEVELVSF 383
Query: 457 TSVKDISKDGGIYKKILTEGEKWEK 531
K+ S D +KI G K E+
Sbjct: 384 VKDKE-SWDLNNSEKIEAAGTKKEE 407
>ref|NP_199668.1| peptidylprolyl isomerase; protein id: At5g48570.1 [Arabidopsis
thaliana] gi|10177347|dbj|BAB10690.1| peptidylprolyl
isomerase [Arabidopsis thaliana]
Length = 578
Score = 254 bits (649), Expect = 5e-67
Identities = 119/150 (79%), Positives = 133/150 (88%)
Frame = +1
Query: 94 SPKDKVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAP 273
+P K+GEE EIG SGL+KKL+KE + W+TPE GDEV+VHYTGTLLDG+KFDSSRDR P
Sbjct: 32 APYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTP 91
Query: 274 FSFTLGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLS 453
F FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++
Sbjct: 92 FKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIA 151
Query: 454 WTSVKDISKDGGIYKKILTEGEKWEKPKDL 543
W SVKDI DGG+ KKI+ EGEKWEKPKDL
Sbjct: 152 WRSVKDICGDGGVSKKIIVEGEKWEKPKDL 181
Score = 111 bits (278), Expect = 5e-24
Identities = 58/143 (40%), Positives = 85/143 (58%), Gaps = 6/143 (4%)
Frame = +1
Query: 130 GNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIK 309
G+ G+ KK++ EG+ WE P+ DEV V Y L DG+ S + FT+ +G
Sbjct: 160 GDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVE----FTVKEGHFCP 215
Query: 310 GWDEGIKTMKKGENALFTIPPELAYGESGSPPT------IPPNATLQFDVELLSWTSVKD 471
+ +KTMK+GE L T+ P+ +GE G P + IPPNATLQ D+EL+SW +V +
Sbjct: 216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275
Query: 472 ISKDGGIYKKILTEGEKWEKPKD 540
++ D + KKIL EGE +E+P +
Sbjct: 276 VTDDRKVIKKILKEGEGYERPNE 298
Score = 88.2 bits (217), Expect = 6e-17
Identities = 53/134 (39%), Positives = 79/134 (58%), Gaps = 6/134 (4%)
Frame = +1
Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF---DSSRDRDAPFSFTLGQGQVIKGWD 318
KK+LKEG+G+E P G V++ G L DG+ + + PF F + + QVI+G +
Sbjct: 284 KKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDEEQVIEGLE 343
Query: 319 EGIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGG 489
+ + MKKGE AL TI PE A+G S S IPPN+T+ ++VEL+S+ K+ S D
Sbjct: 344 KAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKEKE-SWDMN 402
Query: 490 IYKKILTEGEKWEK 531
++I G+K E+
Sbjct: 403 TQERIEAAGKKKEE 416
>pir||S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1 - Arabidopsis thaliana
gi|1373396|gb|AAB82062.1| rof1 [Arabidopsis thaliana]
Length = 551
Score = 249 bits (636), Expect = 2e-65
Identities = 121/146 (82%), Positives = 130/146 (88%)
Frame = +1
Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFT 285
KVGEE+EI GL+KKLLKEG+G+ETPE GDEV+VHYTGTLLDG+KFDSSRDR PF FT
Sbjct: 29 KVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFT 87
Query: 286 LGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 465
LGQGQVIKGWD GIKTMKKGENA+FTIP ELAYGESGSPPTIP NATLQFDVELL W SV
Sbjct: 88 LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSV 147
Query: 466 KDISKDGGIYKKILTEGEKWEKPKDL 543
KDI KDGG++KKIL GEKWE PKDL
Sbjct: 148 KDICKDGGVFKKILAVGEKWENPKDL 173
Score = 103 bits (258), Expect = 1e-21
Identities = 52/141 (36%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
Frame = +1
Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
+ G+ KK+L G+ WE P+ DEV V + L DG+ S + FT+ G
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE----FTVKDGHFCPA 208
Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
+ +KTMKKGE L T+ P+ +GE G P + +PPNATL+ ++EL+SW +V +++
Sbjct: 209 LTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVT 268
Query: 478 KDGGIYKKILTEGEKWEKPKD 540
D + KK+L EG+ +E+P +
Sbjct: 269 DDNKVVKKVLKEGDGYERPNE 289
Score = 84.7 bits (208), Expect = 6e-16
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Frame = +1
Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF--DSSRDRDAPFSFTLGQGQVIKGWDE 321
KK+LKEG G+E P G V+V G L DG+ F + + PF F + QV+ G D
Sbjct: 275 KKVLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR 334
Query: 322 GIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGGI 492
+ MKKGE AL TI PE A+G + S +PPN+T+ ++V+LL++ ++ S D
Sbjct: 335 AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE-SWDMNT 393
Query: 493 YKKILTEGEKWEK 531
+KI +K E+
Sbjct: 394 EEKIEAASKKKEE 406
>gb|AAB82061.1| rof1 [Arabidopsis thaliana]
Length = 551
Score = 249 bits (636), Expect = 2e-65
Identities = 121/146 (82%), Positives = 130/146 (88%)
Frame = +1
Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFT 285
KVGEE+EI GL+KKLLKEG+G+ETPE GDEV+VHYTGTLLDG+KFDSSRDR PF FT
Sbjct: 29 KVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFT 87
Query: 286 LGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 465
LGQGQVIKGWD GIKTMKKGENA+FTIP ELAYGESGSPPTIP NATLQFDVELL W SV
Sbjct: 88 LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSV 147
Query: 466 KDISKDGGIYKKILTEGEKWEKPKDL 543
KDI KDGG++KKIL GEKWE PKDL
Sbjct: 148 KDICKDGGVFKKILAVGEKWENPKDL 173
Score = 103 bits (258), Expect = 1e-21
Identities = 52/141 (36%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
Frame = +1
Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
+ G+ KK+L G+ WE P+ DEV V + L DG+ S + FT+ G
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE----FTVKDGHFCPA 208
Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
+ +KTMKKGE L T+ P+ +GE G P + +PPNATL+ ++EL+SW +V +++
Sbjct: 209 LTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVT 268
Query: 478 KDGGIYKKILTEGEKWEKPKD 540
D + KK+L EG+ +E+P +
Sbjct: 269 DDNKVVKKVLKEGDGYERPNE 289
Score = 84.7 bits (208), Expect = 6e-16
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Frame = +1
Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF--DSSRDRDAPFSFTLGQGQVIKGWDE 321
KK+LKEG G+E P G V+V G L DG+ F + + PF F + QV+ G D
Sbjct: 275 KKVLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR 334
Query: 322 GIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGGI 492
+ MKKGE AL TI PE A+G + S +PPN+T+ ++V+LL++ ++ S D
Sbjct: 335 AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE-SWDMNT 393
Query: 493 YKKILTEGEKWEK 531
+KI +K E+
Sbjct: 394 EEKIEAASKKKEE 406
>ref|NP_189160.2| peptidylprolyl isomerase (ROF1); protein id: At3g25230.1
[Arabidopsis thaliana] gi|9294180|dbj|BAB02082.1|
peptidylprolyl isomerase; FK506-binding protein
[Arabidopsis thaliana]
Length = 555
Score = 249 bits (636), Expect = 2e-65
Identities = 121/146 (82%), Positives = 130/146 (88%)
Frame = +1
Query: 106 KVGEEREIGNSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFT 285
KVGEE+EI GL+KKLLKEG+G+ETPE GDEV+VHYTGTLLDG+KFDSSRDR PF FT
Sbjct: 29 KVGEEKEI-QQGLKKKLLKEGEGYETPENGDEVEVHYTGTLLDGTKFDSSRDRATPFKFT 87
Query: 286 LGQGQVIKGWDEGIKTMKKGENALFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 465
LGQGQVIKGWD GIKTMKKGENA+FTIP ELAYGESGSPPTIP NATLQFDVELL W SV
Sbjct: 88 LGQGQVIKGWDIGIKTMKKGENAVFTIPAELAYGESGSPPTIPANATLQFDVELLKWDSV 147
Query: 466 KDISKDGGIYKKILTEGEKWEKPKDL 543
KDI KDGG++KKIL GEKWE PKDL
Sbjct: 148 KDICKDGGVFKKILAVGEKWENPKDL 173
Score = 103 bits (258), Expect = 1e-21
Identities = 52/141 (36%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
Frame = +1
Query: 133 NSGLRKKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKFDSSRDRDAPFSFTLGQGQVIKG 312
+ G+ KK+L G+ WE P+ DEV V + L DG+ S + FT+ G
Sbjct: 153 DGGVFKKILAVGEKWENPKDLDEVLVKFEAKLEDGTVVGKSDGVE----FTVKDGHFCPA 208
Query: 313 WDEGIKTMKKGENALFTIPPELAYGESGSPPT-----IPPNATLQFDVELLSWTSVKDIS 477
+ +KTMKKGE L T+ P+ +GE G P + +PPNATL+ ++EL+SW +V +++
Sbjct: 209 LTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASAGEGAVPPNATLEINLELVSWKTVSEVT 268
Query: 478 KDGGIYKKILTEGEKWEKPKD 540
D + KK+L EG+ +E+P +
Sbjct: 269 DDNKVVKKVLKEGDGYERPNE 289
Score = 84.7 bits (208), Expect = 6e-16
Identities = 51/133 (38%), Positives = 75/133 (56%), Gaps = 5/133 (3%)
Frame = +1
Query: 148 KKLLKEGQGWETPEVGDEVQVHYTGTLLDGSKF--DSSRDRDAPFSFTLGQGQVIKGWDE 321
KK+LKEG G+E P G V+V G L DG+ F + + PF F + QV+ G D
Sbjct: 275 KKVLKEGDGYERPNEGAVVKVKLIGKLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDR 334
Query: 322 GIKTMKKGENALFTIPPELAYGESGSP---PTIPPNATLQFDVELLSWTSVKDISKDGGI 492
+ MKKGE AL TI PE A+G + S +PPN+T+ ++V+LL++ ++ S D
Sbjct: 335 AVMKMKKGEVALVTIDPEYAFGSNESQQELAVVPPNSTVTYEVDLLTFDKERE-SWDMNT 393
Query: 493 YKKILTEGEKWEK 531
+KI +K E+
Sbjct: 394 EEKIEAASKKKEE 406
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.314 0.137 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,100,341
Number of Sequences: 1393205
Number of extensions: 12432606
Number of successful extensions: 30491
Number of sequences better than 10.0: 690
Number of HSP's better than 10.0 without gapping: 28698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30028
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MPD014a08_f |
AV770925 |
1 |
517 |
2 |
MPDL059d06_f |
AV779499 |
30 |
545 |
|
Lotus japonicus
Kazusa DNA Research Institute