Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005100A_C03 KMC005100A_c03
(1146 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P31165|RK15_PEA 50S RIBOSOMAL PROTEIN L15, CHLOROPLAST PRECUR... 367 e-100
ref|NP_189221.1| 50S ribosomal protein L15, chloroplast precurso... 325 6e-88
emb|CAA77592.1| plastid ribosomal protein CL15 [Arabidopsis thal... 322 5e-87
pir||R5MUL5 ribosomal protein L15 precursor, chloroplast - Arabi... 322 5e-87
dbj|BAA22466.1| 50S ribosomal protein L15 [Synechococcus sp.] 147 2e-34
>sp|P31165|RK15_PEA 50S RIBOSOMAL PROTEIN L15, CHLOROPLAST PRECURSOR (CL15)
gi|81947|pir||S18001 ribosomal protein L15 precursor,
chloroplast - garden pea (fragment)
gi|20867|emb|CAA77595.1| Plastid ribosomal protein CL15
[Pisum sativum]
Length = 258
Score = 367 bits (942), Expect = e-100
Identities = 190/247 (76%), Positives = 210/247 (84%), Gaps = 4/247 (1%)
Frame = -2
Query: 1118 SLASLLPVSSWLPPPLPSPFKGTLKTLEARPCL----KIQRPRPRVFVVTSAAAPVSVSA 951
S ASL+PVSS P L SPFKG +KTL A+PCL KIQR + RV VV AA+ +V +
Sbjct: 2 SAASLIPVSSL--PSLASPFKGNVKTLVAKPCLCPCLKIQRTKLRVSVVNKAASAYNVKS 59
Query: 950 PNVGVRFRLDNLGPQPGSRKKAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRRGFEGGQ 771
VRFRLDNLGPQPGSRK+ KRKGRGI+AGQGASCGFGMRGQKSRSGPG+ RGFEGGQ
Sbjct: 60 SGENVRFRLDNLGPQPGSRKRPKRKGRGIAAGQGASCGFGMRGQKSRSGPGIMRGFEGGQ 119
Query: 770 MPLYRRIPKLRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRE 591
MPLYRR+PKLRGIAGGM AGLPKYV+VNL DIE A FQDG+EVSLE+LK K VINPSGRE
Sbjct: 120 MPLYRRLPKLRGIAGGMHAGLPKYVNVNLTDIENAGFQDGEEVSLETLKAKRVINPSGRE 179
Query: 590 RRLPLKILGEGELSKKLTVKARAFSTSAKEKLESIGCSLTVLPGRKKWVKPSVAKNIARA 411
R+LPLKIL +GELSKKLT+KA AFSTSAKEKLE GCSL VLPGRKKWVKPSVAKN+ARA
Sbjct: 180 RKLPLKILADGELSKKLTIKAGAFSTSAKEKLEYAGCSLIVLPGRKKWVKPSVAKNLARA 239
Query: 410 DEYFAQK 390
+EYFA+K
Sbjct: 240 EEYFAKK 246
>ref|NP_189221.1| 50S ribosomal protein L15, chloroplast precursor; protein id:
At3g25920.1, supported by cDNA: 10926., supported by
cDNA: gi_13877944, supported by cDNA: gi_15983453,
supported by cDNA: gi_16323473 [Arabidopsis thaliana]
gi|21431836|sp|P25873|RK15_ARATH 50S ribosomal protein
L15, chloroplast precursor (CL15)
gi|9279597|dbj|BAB01055.1| chloroplast 50S ribosomal
protein L15 [Arabidopsis thaliana]
gi|13877945|gb|AAK44050.1|AF370235_1 putative 50S
ribosomal protein L15, chloroplast precursor [Arabidopsis
thaliana] gi|15983454|gb|AAL11595.1|AF424601_1
AT3g25920/MPE11_7 [Arabidopsis thaliana]
gi|16323474|gb|AAL15231.1| putative 50S ribosomal protein
L15, chloroplast precursor [Arabidopsis thaliana]
gi|21536722|gb|AAM61054.1| 50S ribosomal protein L15,
chloroplast precursor [Arabidopsis thaliana]
Length = 277
Score = 325 bits (834), Expect = 6e-88
Identities = 173/250 (69%), Positives = 194/250 (77%), Gaps = 14/250 (5%)
Frame = -2
Query: 1061 FKGTLKTLEARPC----LKI----------QRPRPRVFVVTSAAAPVSVSAPNVGVRFRL 924
FKG + L A P LK+ Q RP V V +AA +V AP RFRL
Sbjct: 27 FKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTAATSSAVVAPE---RFRL 83
Query: 923 DNLGPQPGSRKKAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRIPK 744
DNLGPQPGSRKK KRKGRGISAGQGASCGFGMRGQKSRSGPG+ RGFEGGQ LYRR+PK
Sbjct: 84 DNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPK 143
Query: 743 LRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRERRLPLKILG 564
LRGIAGGM +GLPKY+ VN++DIE A FQ+GDEVSLE+LK+KG+INPSGRER+LPLKILG
Sbjct: 144 LRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILG 203
Query: 563 EGELSKKLTVKARAFSTSAKEKLESIGCSLTVLPGRKKWVKPSVAKNIARADEYFAQKPS 384
GELS KLT KARAFST AKEKLE+ GC+LTVLPGRKKWVKPSVAKN ARADEYFA+K +
Sbjct: 204 TGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPGRKKWVKPSVAKNQARADEYFAKKRA 263
Query: 383 CSCQLLNLPP 354
+ + P
Sbjct: 264 AAAEAATSEP 273
>emb|CAA77592.1| plastid ribosomal protein CL15 [Arabidopsis thaliana]
Length = 273
Score = 322 bits (826), Expect = 5e-87
Identities = 172/250 (68%), Positives = 193/250 (76%), Gaps = 14/250 (5%)
Frame = -2
Query: 1061 FKGTLKTLEARPC----LKI----------QRPRPRVFVVTSAAAPVSVSAPNVGVRFRL 924
FKG + L A P LK+ Q RP V V +AA +V AP RFRL
Sbjct: 23 FKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTAATSSAVVAPE---RFRL 79
Query: 923 DNLGPQPGSRKKAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRIPK 744
DNLGPQPGSRKK KRKGRGISAGQGASCGFGMRGQKSRSGPG+ RGFEGGQ LYRR+PK
Sbjct: 80 DNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPK 139
Query: 743 LRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRERRLPLKILG 564
LRGIAGGM +GLPKY+ VN++DIE A FQ+GDEVSLE+LK+KG+INPSGRER+LPLKILG
Sbjct: 140 LRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILG 199
Query: 563 EGELSKKLTVKARAFSTSAKEKLESIGCSLTVLPGRKKWVKPSVAKNIARADEYFAQKPS 384
GELS KLT KARAFST AKEKLE+ GC+LTVLP RKKWVKPSVAKN ARADEYFA+K +
Sbjct: 200 TGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPERKKWVKPSVAKNQARADEYFAKKRA 259
Query: 383 CSCQLLNLPP 354
+ + P
Sbjct: 260 AAAEAATSEP 269
>pir||R5MUL5 ribosomal protein L15 precursor, chloroplast - Arabidopsis thaliana
gi|16497|emb|CAA77593.1| Plastid ribosomal protein CL15
[Arabidopsis thaliana]
Length = 277
Score = 322 bits (826), Expect = 5e-87
Identities = 172/250 (68%), Positives = 193/250 (76%), Gaps = 14/250 (5%)
Frame = -2
Query: 1061 FKGTLKTLEARPC----LKI----------QRPRPRVFVVTSAAAPVSVSAPNVGVRFRL 924
FKG + L A P LK+ Q RP V V +AA +V AP RFRL
Sbjct: 27 FKGNVSVLGANPSQILSLKLNQTLKTRNQQQFARPLVVVSQTAATSSAVVAPE---RFRL 83
Query: 923 DNLGPQPGSRKKAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRIPK 744
DNLGPQPGSRKK KRKGRGISAGQGASCGFGMRGQKSRSGPG+ RGFEGGQ LYRR+PK
Sbjct: 84 DNLGPQPGSRKKQKRKGRGISAGQGASCGFGMRGQKSRSGPGIMRGFEGGQTALYRRLPK 143
Query: 743 LRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRERRLPLKILG 564
LRGIAGGM +GLPKY+ VN++DIE A FQ+GDEVSLE+LK+KG+INPSGRER+LPLKILG
Sbjct: 144 LRGIAGGMRSGLPKYLPVNIKDIETAGFQEGDEVSLETLKQKGLINPSGRERKLPLKILG 203
Query: 563 EGELSKKLTVKARAFSTSAKEKLESIGCSLTVLPGRKKWVKPSVAKNIARADEYFAQKPS 384
GELS KLT KARAFST AKEKLE+ GC+LTVLP RKKWVKPSVAKN ARADEYFA+K +
Sbjct: 204 TGELSMKLTFKARAFSTQAKEKLEASGCTLTVLPERKKWVKPSVAKNQARADEYFAKKRA 263
Query: 383 CSCQLLNLPP 354
+ + P
Sbjct: 264 AAAEAATSEP 273
>dbj|BAA22466.1| 50S ribosomal protein L15 [Synechococcus sp.]
Length = 147
Score = 147 bits (372), Expect = 2e-34
Identities = 81/155 (52%), Positives = 106/155 (68%)
Frame = -2
Query: 929 RLDNLGPQPGSRKKAKRKGRGISAGQGASCGFGMRGQKSRSGPGVRRGFEGGQMPLYRRI 750
+LDNL PQPG++K+ +R GRGI+AGQGASCGFGMRGQKSRSG R GFEGGQMPLYRR+
Sbjct: 2 KLDNLAPQPGAKKRKRRVGRGIAAGQGASCGFGMRGQKSRSGRPTRPGFEGGQMPLYRRV 61
Query: 749 PKLRGIAGGMSAGLPKYVHVNLRDIEGAKFQDGDEVSLESLKEKGVINPSGRERRLPLKI 570
PKL+ Y VN+ + G G EV+LESL G++ + PLKI
Sbjct: 62 PKLKHFP---LINRKFYTVVNVGALAG--LAAGTEVTLESLMAVGIVTQNDG----PLKI 112
Query: 569 LGEGELSKKLTVKARAFSTSAKEKLESIGCSLTVL 465
LG+GELS L+V A AF+ +A++K+E+ G S+ ++
Sbjct: 113 LGDGELSVSLSVSAAAFTATAQQKIEAAGGSIALV 147
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 999,167,495
Number of Sequences: 1393205
Number of extensions: 23890507
Number of successful extensions: 80450
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 70539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79546
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 70281887232
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
