Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005096A_C01 KMC005096A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O23758|NLTP_CICAR NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSO... 156 2e-37
sp|P19656|NLTP_MAIZE Nonspecific lipid-transfer protein precurso... 135 5e-31
pir||T02038 phospholipid transfer protein - rice gi|2407271|gb|A... 134 1e-30
pir||T02044 lipid transfer protein LPT IV - rice gi|2407277|gb|A... 132 3e-30
sp|Q43748|NLTP_BETVU Nonspecific lipid-transfer protein precurso... 132 3e-30
>sp|O23758|NLTP_CICAR NONSPECIFIC LIPID-TRANSFER PROTEIN PRECURSOR (LTP)
gi|2632171|emb|CAA05771.1| lipid transfer protein [Cicer
arietinum]
Length = 116
Score = 156 bits (395), Expect = 2e-37
Identities = 72/114 (63%), Positives = 90/114 (78%)
Frame = -3
Query: 633 SVKFVCALVVLSMLVAPMPEAAITCGAIASALIPCPAYIQGGAGPSPPCCAGVRRVNSAA 454
S+K VC +++ +++APM E+AITCG + +AL PC Y+QGG GPS CC GVR +NSAA
Sbjct: 3 SMKVVCVALIMCIVIAPMAESAITCGRVDTALAPCLGYLQGGPGPSAQCCGGVRNLNSAA 62
Query: 453 SSTADRRAACNCLKSAAGSFPRFNAGNAASLPGKCGVDIPYQISTSTHCANITV 292
+T DR+AACNCLKSAAGS R NA NAA+LPGKC V+IPY+ISTST+CA I V
Sbjct: 63 VTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATIRV 116
>sp|P19656|NLTP_MAIZE Nonspecific lipid-transfer protein precursor (LTP) (Phospholipid
transfer protein) (PLTP) (Allergen Zea m 14)
gi|82711|pir||A31779 phospholipid transfer protein 9C2
precursor - maize gi|168576|gb|AAA33493.1| phospholipid
transfer protein precursor
Length = 120
Score = 135 bits (340), Expect = 5e-31
Identities = 65/107 (60%), Positives = 81/107 (74%), Gaps = 1/107 (0%)
Frame = -3
Query: 615 ALVVLSMLVAPMPEAAITCGAIASALIPCPAYIQG-GAGPSPPCCAGVRRVNSAASSTAD 439
A+V L +L A EAAI+CG +ASA+ PC +Y +G G+GPS CC+GVR +N+AA +TAD
Sbjct: 13 AVVALVLLAAATSEAAISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTAD 72
Query: 438 RRAACNCLKSAAGSFPRFNAGNAASLPGKCGVDIPYQISTSTHCANI 298
RRAACNCLK+AA NAGNAAS+P KCGV IPY ISTST C+ +
Sbjct: 73 RRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119
>pir||T02038 phospholipid transfer protein - rice gi|2407271|gb|AAB70538.1|
lipid transfer protein [Oryza sativa]
Length = 115
Score = 134 bits (336), Expect = 1e-30
Identities = 60/104 (57%), Positives = 80/104 (76%)
Frame = -3
Query: 609 VVLSMLVAPMPEAAITCGAIASALIPCPAYIQGGAGPSPPCCAGVRRVNSAASSTADRRA 430
+V ++L+A AAI+CG + SA+ PC +Y +GG+GPS CC+GVR +NSAA++TADRR
Sbjct: 11 LVAALLLAAQAMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRNLNSAATTTADRRT 70
Query: 429 ACNCLKSAAGSFPRFNAGNAASLPGKCGVDIPYQISTSTHCANI 298
ACNCLK+ AGS NAGNAAS+P KCGV IPY IS S +C+++
Sbjct: 71 ACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSVYCSSV 114
>pir||T02044 lipid transfer protein LPT IV - rice gi|2407277|gb|AAB70541.1|
lipid transfer protein LPT IV [Oryza sativa]
Length = 116
Score = 132 bits (333), Expect = 3e-30
Identities = 61/107 (57%), Positives = 76/107 (71%)
Frame = -3
Query: 615 ALVVLSMLVAPMPEAAITCGAIASALIPCPAYIQGGAGPSPPCCAGVRRVNSAASSTADR 436
A+V +L AP AITCG + SA+ PC Y +GGAGPS CC+GVR + +AAS+TADR
Sbjct: 10 AVVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSGVRSLKAAASNTADR 69
Query: 435 RAACNCLKSAAGSFPRFNAGNAASLPGKCGVDIPYQISTSTHCANIT 295
R ACNCLK+AA NAGNAAS+P KCGV +PY IS S HC+ ++
Sbjct: 70 RTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIHCSRVS 116
>sp|Q43748|NLTP_BETVU Nonspecific lipid-transfer protein precursor (LTP)
gi|7438291|pir||T14553 probable lipid transfer protein
IWF1' precursor - beet gi|1212810|emb|CAA63407.1| IWF1'
[Beta vulgaris]
Length = 117
Score = 132 bits (333), Expect = 3e-30
Identities = 63/108 (58%), Positives = 77/108 (70%)
Frame = -3
Query: 630 VKFVCALVVLSMLVAPMPEAAITCGAIASALIPCPAYIQGGAGPSPPCCAGVRRVNSAAS 451
VKF CALV+ M+ AP+ EA ITCG +AS L PC Y+QG GPS CC G++ +NSAA+
Sbjct: 7 VKFTCALVMCMMVAAPLAEA-ITCGLVASKLAPCIGYLQGAPGPSAACCGGIKSLNSAAA 65
Query: 450 STADRRAACNCLKSAAGSFPRFNAGNAASLPGKCGVDIPYQISTSTHC 307
S ADR+ AC CLKSAA S N G AASLP +CGV +PY IS +T+C
Sbjct: 66 SPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNC 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,372,876
Number of Sequences: 1393205
Number of extensions: 13510366
Number of successful extensions: 55250
Number of sequences better than 10.0: 334
Number of HSP's better than 10.0 without gapping: 48151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54404
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
