Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005094A_C01 KMC005094A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM21344.1|AF373603_1 MADS-box protein 4 [Vitis vinifera] 111 8e-24
pir||T06543 MADS box protein - garden pea gi|3184054|emb|CAA1125... 103 2e-21
gb|AAD39034.1|AF068722_1 MADS-box protein MADS3 [Nicotiana sylve... 100 1e-20
sp|Q03489|AGL9_PETHY Agamous-like MADS box protein AGL9 homolog ... 97 2e-19
gb|AAN15182.1| MADS box protein GHMADS-1 [Gossypium hirsutum] 94 1e-18
>gb|AAM21344.1|AF373603_1 MADS-box protein 4 [Vitis vinifera]
Length = 242
Score = 111 bits (277), Expect = 8e-24
Identities = 49/72 (68%), Positives = 57/72 (79%)
Frame = -1
Query: 596 RQLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGP 417
R LEG Q+N LQ NP +D+GYGR AQ GD F+HP+ECEPTLQIGYQPDP++V AGP
Sbjct: 172 RLLEGTQVNQLQWNPNAQDVGYGRQQAQPQGDGFFHPLECEPTLQIGYQPDPITVAAAGP 231
Query: 416 SMNNNYMAGWLP 381
S+ NNYM GWLP
Sbjct: 232 SV-NNYMPGWLP 242
>pir||T06543 MADS box protein - garden pea gi|3184054|emb|CAA11258.1| MADS-box
transcription factor [Pisum sativum]
Length = 247
Score = 103 bits (256), Expect = 2e-21
Identities = 54/76 (71%), Positives = 59/76 (77%), Gaps = 4/76 (5%)
Frame = -1
Query: 596 RQLEGYQLNSLQLNPGVEDMGYGRH-PAQTHGDAFYH--PIECEPTLQIGY-QPDPVSVV 429
+++EGYQ+NSLQLN EDMGYGRH THGD + PIECEPTLQIGY Q DP SVV
Sbjct: 173 QRMEGYQINSLQLNLSAEDMGYGRHHQGHTHGDELFQVQPIECEPTLQIGYHQGDPGSVV 232
Query: 428 TAGPSMNNNYMAGWLP 381
TAGPSM NNYM GWLP
Sbjct: 233 TAGPSM-NNYMGGWLP 247
>gb|AAD39034.1|AF068722_1 MADS-box protein MADS3 [Nicotiana sylvestris]
Length = 241
Score = 100 bits (249), Expect = 1e-20
Identities = 48/72 (66%), Positives = 55/72 (75%)
Frame = -1
Query: 596 RQLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGP 417
R +EG QLN LQ +DMGYGR QT GD F+HP+ECEPTLQIGYQ DP++V AGP
Sbjct: 172 RLMEGSQLN-LQWQQNAQDMGYGRQTTQTQGDGFFHPLECEPTLQIGYQNDPITVGGAGP 230
Query: 416 SMNNNYMAGWLP 381
S+ NNYMAGWLP
Sbjct: 231 SV-NNYMAGWLP 241
>sp|Q03489|AGL9_PETHY Agamous-like MADS box protein AGL9 homolog (Floral homeotic protein
FBP2) (Floral binding protein 2)
gi|1181186|gb|AAA86854.1| transcription factor
Length = 241
Score = 96.7 bits (239), Expect = 2e-19
Identities = 46/72 (63%), Positives = 54/72 (74%)
Frame = -1
Query: 596 RQLEGYQLNSLQLNPGVEDMGYGRHPAQTHGDAFYHPIECEPTLQIGYQPDPVSVVTAGP 417
R +EG LN LQ +D+GYGR QT GD F+HP+ECEPTLQIGYQ DP++V AGP
Sbjct: 172 RLMEGSTLN-LQWQQNAQDVGYGRQATQTQGDGFFHPLECEPTLQIGYQNDPITVGGAGP 230
Query: 416 SMNNNYMAGWLP 381
S+ NNYMAGWLP
Sbjct: 231 SV-NNYMAGWLP 241
>gb|AAN15182.1| MADS box protein GHMADS-1 [Gossypium hirsutum]
Length = 236
Score = 94.4 bits (233), Expect = 1e-18
Identities = 45/63 (71%), Positives = 52/63 (82%), Gaps = 3/63 (4%)
Frame = -1
Query: 596 RQLEGYQLNSLQLNPGV-EDMGYGRHPA--QTHGDAFYHPIECEPTLQIGYQPDPVSVVT 426
R +EGYQ+NSLQLNP ED+GYGR Q HGDAF+HP++CEPTLQIGYQ DP+SVVT
Sbjct: 173 RLVEGYQVNSLQLNPNATEDVGYGRQQVHHQPHGDAFFHPLDCEPTLQIGYQHDPMSVVT 232
Query: 425 AGP 417
AGP
Sbjct: 233 AGP 235
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,974,466
Number of Sequences: 1393205
Number of extensions: 11886995
Number of successful extensions: 28595
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 26708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28308
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
