Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC005093A_C01 KMC005093A_c01
(1073 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181715.1| 40S ribosomal protein S2; protein id: At2g41840... 295 e-124
gb|AAM67061.1| ribosomal protein S2, putative [Arabidopsis thali... 295 e-124
ref|NP_176134.1| ribosomal protein S2, putative; protein id: At1... 295 e-124
ref|NP_564737.1| ribosomal protein S2, putative; protein id: At1... 295 e-124
ref|NP_191308.1| 40S ribosomal protein S2 homolog; protein id: A... 296 e-123
>ref|NP_181715.1| 40S ribosomal protein S2; protein id: At2g41840.1, supported by
cDNA: 17415., supported by cDNA: gi_15081714
[Arabidopsis thaliana] gi|3915847|sp|P49688|RS2_ARATH
40S ribosomal protein S2 gi|25294522|pir||G84846 40S
ribosomal protein S2 [imported] - Arabidopsis thaliana
gi|2335095|gb|AAC02764.1| 40S ribosomal protein S2
[Arabidopsis thaliana] gi|15081715|gb|AAK82512.1|
At2g41840/T11A7.6 [Arabidopsis thaliana]
gi|22137092|gb|AAM91391.1| At2g41840/T11A7.6
[Arabidopsis thaliana]
Length = 285
Score = 295 bits (756), Expect(2) = e-124
Identities = 142/151 (94%), Positives = 147/151 (97%)
Frame = +2
Query: 395 FKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCK 574
FKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 118 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 177
Query: 575 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 754
VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC
Sbjct: 178 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 237
Query: 755 LLKTYGFLTPEFWKETRFTKSPFQEYTDLLA 847
L KTYGFLTPEFWKETRF++SP+QE+TD LA
Sbjct: 238 LQKTYGFLTPEFWKETRFSRSPYQEHTDFLA 268
Score = 172 bits (435), Expect(2) = e-124
Identities = 94/123 (76%), Positives = 101/123 (81%), Gaps = 8/123 (6%)
Frame = +1
Query: 61 MAERGGGERG---GGDRGGFGRGFGGRGRGGDRG---RGGR--RRGAGRRDEEEKWVPVT 216
MAERGG ERG GG+RG FGRGFGGRG GDRG RGGR RRG GR EEEKWVPVT
Sbjct: 1 MAERGG-ERGVERGGERGDFGRGFGGRGGRGDRGGRGRGGRGGRRG-GRASEEEKWVPVT 58
Query: 217 KLGRLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRV 396
KLGRLV G I+ +EQIYLHSLP+KE+QIID L+GPTLKDEVMKIMPVQKQTRAGQRTR
Sbjct: 59 KLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRF 118
Query: 397 QGF 405
+ F
Sbjct: 119 KAF 121
>gb|AAM67061.1| ribosomal protein S2, putative [Arabidopsis thaliana]
Length = 284
Score = 295 bits (755), Expect(2) = e-124
Identities = 142/157 (90%), Positives = 148/157 (93%)
Frame = +2
Query: 395 FKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCK 574
FKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 575 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 754
VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 236
Query: 755 LLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKA 865
L KTYGFLTPEFWKETRF++SP+QE+TD L+ A
Sbjct: 237 LQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273
Score = 172 bits (435), Expect(2) = e-124
Identities = 91/120 (75%), Positives = 94/120 (77%), Gaps = 5/120 (4%)
Frame = +1
Query: 61 MAERGG--GERGGGDRGGFGRGFGGR---GRGGDRGRGGRRRGAGRRDEEEKWVPVTKLG 225
MAERGG G GGDRG FGRGFGG GRG DRG GR R GR EE KWVPVTKLG
Sbjct: 1 MAERGGEGGTERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLG 60
Query: 226 RLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRVQGF 405
RLV D KI LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQTRAGQRTR + F
Sbjct: 61 RLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>ref|NP_176134.1| ribosomal protein S2, putative; protein id: At1g58380.1
[Arabidopsis thaliana] gi|11276533|pir||T50673 ribosomal
protein S2 homolog XW6 [imported] - Arabidopsis thaliana
gi|6566272|dbj|BAA88263.1| similar to ribosomal protein
S2 [Arabidopsis thaliana]
gi|12321043|gb|AAG50639.1|AC082643_3 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|14423442|gb|AAK62403.1|AF386958_1 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|18181932|dbj|BAB83870.1| ribosomal protein S2
[Arabidopsis thaliana] gi|18377554|gb|AAL66943.1|
ribosomal protein S2, putative [Arabidopsis thaliana]
Length = 284
Score = 295 bits (755), Expect(2) = e-124
Identities = 142/157 (90%), Positives = 148/157 (93%)
Frame = +2
Query: 395 FKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCK 574
FKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 575 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 754
VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 236
Query: 755 LLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKA 865
L KTYGFLTPEFWKETRF++SP+QE+TD L+ A
Sbjct: 237 LQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273
Score = 172 bits (435), Expect(2) = e-124
Identities = 91/120 (75%), Positives = 94/120 (77%), Gaps = 5/120 (4%)
Frame = +1
Query: 61 MAERGG--GERGGGDRGGFGRGFGGR---GRGGDRGRGGRRRGAGRRDEEEKWVPVTKLG 225
MAERGG G GGDRG FGRGFGG GRG DRG GR R GR EE KWVPVTKLG
Sbjct: 1 MAERGGEGGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLG 60
Query: 226 RLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRVQGF 405
RLV D KI LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQTRAGQRTR + F
Sbjct: 61 RLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>ref|NP_564737.1| ribosomal protein S2, putative; protein id: At1g58983.1, supported
by cDNA: gi_18086425 [Arabidopsis thaliana]
gi|18406353|ref|NP_564740.1| ribosomal protein S2,
putative; protein id: At1g59359.1 [Arabidopsis thaliana]
gi|22330310|ref|NP_683443.1| similar to ribosomal
protein S2, putative; protein id: At1g58684.1, supported
by cDNA: gi_18086425 [Arabidopsis thaliana]
gi|14475933|gb|AAK62780.1|AC027036_1 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|14475937|gb|AAK62784.1|AC027036_5 ribosomal protein
S2, putative [Arabidopsis thaliana]
gi|18086426|gb|AAL57668.1| At1g59359/T4M14_3
[Arabidopsis thaliana] gi|18146720|dbj|BAB82426.1|
ribosomal protein S2 [Arabidopsis thaliana]
gi|18265370|dbj|BAB84012.1| ribosomal protein S2
[Arabidopsis thaliana] gi|18265374|dbj|BAB84016.1|
ribosomal protein S2 [Arabidopsis thaliana]
gi|22137288|gb|AAM91489.1| At1g59359/T4M14_3
[Arabidopsis thaliana]
Length = 284
Score = 295 bits (755), Expect(2) = e-124
Identities = 142/157 (90%), Positives = 148/157 (93%)
Frame = +2
Query: 395 FKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCK 574
FKAFVVVGD NGHVGLGVKCSKEVATAIRG IILAKLSV+PVRRGYWGNKIGKPHTVPCK
Sbjct: 117 FKAFVVVGDGNGHVGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCK 176
Query: 575 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 754
VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC
Sbjct: 177 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 236
Query: 755 LLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKPTAKA 865
L KTYGFLTPEFWKETRF++SP+QE+TD L+ A
Sbjct: 237 LQKTYGFLTPEFWKETRFSRSPYQEHTDFLSTKAVSA 273
Score = 172 bits (435), Expect(2) = e-124
Identities = 91/120 (75%), Positives = 94/120 (77%), Gaps = 5/120 (4%)
Frame = +1
Query: 61 MAERGG--GERGGGDRGGFGRGFGGR---GRGGDRGRGGRRRGAGRRDEEEKWVPVTKLG 225
MAERGG G GGDRG FGRGFGG GRG DRG GR R GR EE KWVPVTKLG
Sbjct: 1 MAERGGESGAERGGDRGDFGRGFGGGRGGGRGRDRGPRGRGRRGGRASEETKWVPVTKLG 60
Query: 226 RLVRDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRVQGF 405
RLV D KI LEQIYLHSLP+KE+QIID LVGPTLKDEVMKIMPVQKQTRAGQRTR + F
Sbjct: 61 RLVADNKITKLEQIYLHSLPVKEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAF 120
>ref|NP_191308.1| 40S ribosomal protein S2 homolog; protein id: At3g57490.1,
supported by cDNA: 101250. [Arabidopsis thaliana]
gi|11276536|pir||T46185 ribosomal protein S2, cytosolic
[similarity] - Arabidopsis thaliana
gi|6706420|emb|CAB66106.1| 40S ribosomal protein S2
homolog [Arabidopsis thaliana]
gi|21536514|gb|AAM60846.1| 40S ribosomal protein S2
homolog [Arabidopsis thaliana]
Length = 276
Score = 296 bits (757), Expect(2) = e-123
Identities = 141/153 (92%), Positives = 148/153 (96%)
Frame = +2
Query: 395 FKAFVVVGDNNGHVGLGVKCSKEVATAIRGGIILAKLSVIPVRRGYWGNKIGKPHTVPCK 574
FKAF+VVGD+NGHVGLGVKCSKEVATAIRG IILAKLSV+P+RRGYWGNKIGKPHTVPCK
Sbjct: 109 FKAFIVVGDSNGHVGLGVKCSKEVATAIRGAIILAKLSVVPIRRGYWGNKIGKPHTVPCK 168
Query: 575 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 754
VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC
Sbjct: 169 VTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDC 228
Query: 755 LLKTYGFLTPEFWKETRFTKSPFQEYTDLLAKP 853
L KTYGFLTPEFWKETRF+KSP+QE+TD L P
Sbjct: 229 LQKTYGFLTPEFWKETRFSKSPYQEHTDFLLIP 261
Score = 171 bits (432), Expect(2) = e-123
Identities = 92/117 (78%), Positives = 99/117 (83%), Gaps = 2/117 (1%)
Frame = +1
Query: 61 MAERGGGERGGGDRGGFGRGFGGRG--RGGDRGRGGRRRGAGRRDEEEKWVPVTKLGRLV 234
MAERG ERGG DRG FGRGFGGRG RGG RGRG R AGR EEEKWVPVTKLGRLV
Sbjct: 1 MAERGV-ERGG-DRGDFGRGFGGRGGGRGGPRGRGRR---AGRAPEEEKWVPVTKLGRLV 55
Query: 235 RDGKIRSLEQIYLHSLPIKEHQIIDTLVGPTLKDEVMKIMPVQKQTRAGQRTRVQGF 405
++GKI +EQIYLHSLP+KE+QIID LVGP+LKDEVMKIMPVQKQTRAGQRTR + F
Sbjct: 56 KEGKITKIEQIYLHSLPVKEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAF 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,060,470,284
Number of Sequences: 1393205
Number of extensions: 29485701
Number of successful extensions: 458181
Number of sequences better than 10.0: 5495
Number of HSP's better than 10.0 without gapping: 137622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 316835
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64292115691
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
